Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Dickeya dianthicola ME23

 Score =  386 bits (992), Expect = e-112
 Identities = 207/437 (47%), Positives = 270/437 (61%), Gaps = 1/437 (0%)

Query: 1   MARFFQPKKHSTLDTKHQPVTIERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKS 60
           MA+F+ P +  T   +   VT   LD  G G+A    K LF+ G LPGE+  +QLTE K 
Sbjct: 1   MAQFYSPNRRVTT-RQTLTVTANDLDPFGQGVARHQGKTLFIPGVLPGEQAEVQLTEEKR 59

Query: 61  KYARGQLIKVLKPSAERVAPFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQS 120
           ++A  +L ++L  S ERV P C H++ CGGC  QH  +  Q   K  AL+ LM +  G  
Sbjct: 60  QFAHARLRRLLTTSEERVTPRCPHFSVCGGCQQQHASQPLQHRSKAAALTHLMTRETGAV 119

Query: 121 LALSAPVCSDDQGYRRRARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALL 180
                 +      YRRRARL+L +  KT +LQ+G+R+  S  +V++  CP+L P L ALL
Sbjct: 120 PPEPEVIAESAYAYRRRARLALYYQAKTHRLQMGYRQAGSHDLVDIAACPILCPELEALL 179

Query: 181 PDLNALLSEWSQPERLGHVELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLM 240
             L   L +     RLGHVELV  +   ++VLRHL  L + D+Q LT FA  +   L+  
Sbjct: 180 APLRDCLGQLQAVRRLGHVELVLAEQGPLVVLRHLDPLRDADRQALTAFAVLHGTALFSA 239

Query: 241 LEAGELQHVQGEAPYCEETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDL 300
            EAG L+ + G+ P     G  L+F P  FIQVN  +NQ MV QAL WL+  PQ+RVLDL
Sbjct: 240 PEAGALECLHGDMPSYRIAGLSLAFSPRDFIQVNDGINQRMVEQALTWLDPQPQDRVLDL 299

Query: 301 FCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWA 360
           FCG+GNFTLPLA +A +VVGVEGV  +V     NA+ N +  V FY  +LE D+T   WA
Sbjct: 300 FCGMGNFTLPLAVRAGSVVGVEGVAALVDKGRENARRNGLTQVTFYHHDLEADVTLQPWA 359

Query: 361 QQKFAKVLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGM 420
              F K+LLDPARAGA G++ Q+  L  +RVVY+SCNP TLARDS  L++ G+RL +L M
Sbjct: 360 AMGFDKILLDPARAGAPGVMPQIVKLAPRRVVYISCNPTTLARDSNVLMAAGYRLARLAM 419

Query: 421 LDMFPHTSHLESMALFV 437
           LDMFPHT HLESMALF+
Sbjct: 420 LDMFPHTGHLESMALFL 436