Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 376 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Dickeya dadantii 3937

 Score =  101 bits (251), Expect = 5e-26
 Identities = 99/383 (25%), Positives = 161/383 (42%), Gaps = 35/383 (9%)

Query: 82  CAHY--AQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRAR 139
           CA Y    C  C         Q+  KQQ L  L+     Q     APV S +  +R +A+
Sbjct: 3   CARYNDGSCRSCQWLETAYPQQVTDKQQHLLGLLAAHPVQRWL--APVTSAEAAFRNKAK 60

Query: 140 LSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNAL-----LSEWSQPE 194
           + +      ++  LG   +   A V++  CP+   S   +   L A      L+ ++   
Sbjct: 61  MVV--SGSVERPLLGMLHRDGSA-VDLCDCPLYPDSFAPVFSVLKAFIARAGLTPYNVAR 117

Query: 195 RLGHVE----------------LVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLY 238
           R G ++                +V    T++  LR     ++Q   +LT  ++  Q    
Sbjct: 118 RRGELKYLLLTQSTLSGRFMLRVVLRSETKLAQLRAALPWLQQQLPQLTVISANIQPVHQ 177

Query: 239 LMLEAGELQHVQGEAPYCEETGSR--LSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQER 296
            +LE GE +    EA   EE  ++  L   P  F Q N  V   +   A  W+   P   
Sbjct: 178 AILE-GEQEIPLTEAQALEERFNQVPLYIRPQSFFQTNPQVAAALYDTARQWVSTLPVRS 236

Query: 297 VLDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTS 356
           + DLFCG+G F L  A     + G+E   E +  A  +A    + NV+F  A L+    +
Sbjct: 237 LWDLFCGVGGFGLHCASSDTPLTGIEISPEAIACARRSAAQLGLTNVSF--AALDSTRFA 294

Query: 357 ASWAQQKFAKVLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLE 416
              AQ     ++  P R     + D LS +    ++Y SCN  ++ARD   L    ++++
Sbjct: 295 VGEAQTPDLVIVNPPRRGIGAELCDYLSRMAPPYLLYSSCNAESMARDIARL--PAYQIQ 352

Query: 417 KLGMLDMFPHTSHLESMALFVKK 439
           +  + DMFPHT+H E +AL  ++
Sbjct: 353 QAQLFDMFPHTAHYEVLALLQRR 375