Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., 23S rRNA m(5)U1939 methyltransferase, SAM-dependent from Escherichia coli BL21

 Score =  394 bits (1013), Expect = e-114
 Identities = 211/436 (48%), Positives = 277/436 (63%), Gaps = 7/436 (1%)

Query: 1   MARFFQPKKHSTLDTKHQPVTIERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKS 60
           MA+F+  K+ +T   +   V++  LD  G G+A  + K LF+ G LP E   + +TE+K 
Sbjct: 1   MAQFYSAKRRTTT-RQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKK 59

Query: 61  KYARGQLIKVLKPSAERVAPFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQS 120
           +YAR ++++ L  S ER  P C H+  CGGC  QH     Q   K  AL++LM     + 
Sbjct: 60  QYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEV 119

Query: 121 LALSAPVCSDDQGYRRRARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALL 180
           +A          GYRRRARLSL +  KTQQLQ+GFR+  S  IV+V  CP+L P L ALL
Sbjct: 120 IA------DVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALL 173

Query: 181 PDLNALLSEWSQPERLGHVELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLM 240
           P + A L        LGHVELV+  +  +++LRH   L   D+++L  F+    L LYL 
Sbjct: 174 PKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLA 233

Query: 241 LEAGELQHVQGEAPYCEETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDL 300
            ++  L+ V GE P+ +  G RL+F P  FIQVN  VNQ MV +AL  L+V P++RVLDL
Sbjct: 234 PDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALELLDVQPEDRVLDL 293

Query: 301 FCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWA 360
           FCG+GNFTLPLA QA +VVGVEGV  +V+    NA+LN + NV FY  NLE+D+T   WA
Sbjct: 294 FCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA 353

Query: 361 QQKFAKVLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGM 420
           +  F KVLLDPARAGA G++ Q+  L   R+VYVSCNPATLARDS++LL  G+ + +L M
Sbjct: 354 KNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAM 413

Query: 421 LDMFPHTSHLESMALF 436
           LDMFPHT HLESM LF
Sbjct: 414 LDMFPHTGHLESMVLF 429