Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., tRNA (uracil(54)-C(5))-methyltransferase from Alteromonas macleodii MIT1002

 Score = 91.7 bits (226), Expect = 3e-23
 Identities = 64/188 (34%), Positives = 99/188 (52%), Gaps = 19/188 (10%)

Query: 266 LPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAVVGVEGVD 325
           + + F Q N  VN  M+  AL+ ++    + +L+++CG GNF+LPLA     VVG E   
Sbjct: 182 IENSFTQPNAEVNCSMIEWALDCVKPLSGD-LLEMYCGAGNFSLPLALHFDNVVGTEIAK 240

Query: 326 EMVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQKFAK-------------VLLDPA 372
             VQ A  N + NQ+NNV   +   E + T A   ++ F++             VL+DP 
Sbjct: 241 PSVQAAQFNIEQNQLNNVKIVRLAAE-EFTQAMKGERTFSRLEGIDLSTYNFTTVLVDPP 299

Query: 373 RAGAEGIVDQLSAL-GAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLE 431
           RAG +   D L  +     +VY+SCNP TLA++ + LLS+   + +  + D FP T H+E
Sbjct: 300 RAGLD--EDSLRMIQDYDNIVYISCNPETLAQNLE-LLSETHDVAQSALFDQFPFTHHIE 356

Query: 432 SMALFVKK 439
           +  L  +K
Sbjct: 357 AGVLLTRK 364