Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., RNA methyltransferase from Agrobacterium fabrum C58

 Score =  144 bits (362), Expect = 7e-39
 Identities = 133/437 (30%), Positives = 215/437 (49%), Gaps = 40/437 (9%)

Query: 18  QPVTIERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKSKYARGQLIKVLKPSAER 77
           Q VTI+ L  QG G+A     P++V  ALPGE V I   +++     G ++ + + SA+R
Sbjct: 4   QTVTIKSLGAQGDGIAHCPDGPVYVPFALPGETVAIAKVKDQ-----GTVMSITEASADR 58

Query: 78  VAPFCAHYAQ------CGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDD 131
             P C H+        CGGC LQHL  A Q +H   A  + +V  A +S  L+ PV  DD
Sbjct: 59  RDPVCRHFGPEGINGTCGGCSLQHL--ADQPYH---AFKRELVVSALRSKGLTPPV--DD 111

Query: 132 -----QGYRRRARLSLMWDKKTQQ-LQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNA 185
                 G RRRA  +    +KT++ L LGF +  S  IV +  CPV  P + +    + A
Sbjct: 112 LVICRPGERRRAVFAA---RKTEKGLLLGFSQANSHHIVAIEECPVTSPGIVSRFDAIRA 168

Query: 186 L---LSEWSQPERLGHVELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLMLE 242
           +   +   ++P R+  +E + G +  V  ++ +    ++ ++ LT+     +    + L 
Sbjct: 169 IGLSMVANAEPFRITVLETLSGLDISVEGIKSVN---DKQRRTLTETVLAMRGIARVSL- 224

Query: 243 AGELQHVQGEAPYCEETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFC 302
           +GE+  ++ + P  E  G  +S     F Q  +     M    L    V   +R+ DLFC
Sbjct: 225 SGEIL-IEPQKPIIEFGGIPVSPPAGGFTQATKQAEDAMAELML--AHVGKSKRIADLFC 281

Query: 303 GLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQ-INNVAFYQANLEQDMTSASWAQ 361
           G G F L LA+  + V  VE  D+ ++     A+  Q +  V+  + +L +     S   
Sbjct: 282 GSGTFALRLARIGR-VHAVEAEDKALKALDFAARNTQGLKPVSVEKRDLFRRPLMTS-EL 339

Query: 362 QKFAKVLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGML 421
           + +  V+ DP RAGAE    +L+    K++V VSCNP TLARD   L   G+R+ ++  +
Sbjct: 340 KNYDAVVFDPPRAGAEVQCKELARSTVKKIVAVSCNPLTLARDLAILTEGGYRVTRVTPV 399

Query: 422 DMFPHTSHLESMALFVK 438
           D F  + H+E++A+  K
Sbjct: 400 DQFLWSPHVEAVAVLEK 416