Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., tRNA/tmRNA (uracil-C(5))-methyltransferase from Acinetobacter radioresistens SK82

 Score =  100 bits (249), Expect = 7e-26
 Identities = 101/370 (27%), Positives = 165/370 (44%), Gaps = 49/370 (13%)

Query: 101 QIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQQLQLGFRRK-- 158
           Q+  K Q +S    +F   +L +     S +Q +R RA   + W          F R   
Sbjct: 8   QLEAKIQRISTQFAEFNPPALEVFG---SPEQHFRMRAEFRI-WHTDQDMFYAMFERNPE 63

Query: 159 -QSKAIVNVTHCPVLEPSLNALLPDLNA-LLSEWSQPERLGHVELVKGDNTRVLVL---- 212
            Q K ++ V   P+ + S+N L+P L A L ++    +RL  V+ +   +  +LV     
Sbjct: 64  DQQKTVIRVDEFPIADHSINQLMPILLAELKADPLLEKRLFEVDFLATLSGEMLVTLIYH 123

Query: 213 --------RHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEETGSRLS 264
                   +    L E+   ++   +   +L L       ELQ ++ +  Y +  G    
Sbjct: 124 RKLDNEWEKAARTLAEKLNIKIIGRSRGQKLVLTDDFVVEELQVLEQKFKYKQIEGG--- 180

Query: 265 FLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAVVGVEGV 324
                F Q N  V Q M+  A    E S Q+ +L+L+CG GNFTLPL+ + + V+  E  
Sbjct: 181 -----FTQPNAIVCQKMLEWACKAAEAS-QKHLLELYCGNGNFTLPLSLKFERVLATELA 234

Query: 325 DEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQKFAK---------------VLL 369
              V  A  N + N I+N+   + + E + T A   +++F +               V +
Sbjct: 235 KSSVYAAQWNIEQNGIDNIQVARLSAE-EFTQAFNGEREFRRLQEAEIDIQSYEFDTVFV 293

Query: 370 DPARAGAEGIVDQLSALGA-KRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTS 428
           DP RAG +  +D L  L    R++Y+SCNP TL  D+  +L +  ++ K  M D FP+T 
Sbjct: 294 DPPRAGID--LDTLKLLQRFDRIIYISCNPDTL-HDNLKILLESHKILKFAMFDQFPYTH 350

Query: 429 HLESMALFVK 438
           H+E+  L  K
Sbjct: 351 HVETGILLEK 360