Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Acinetobacter radioresistens SK82

 Score =  310 bits (794), Expect = 6e-89
 Identities = 177/445 (39%), Positives = 254/445 (57%), Gaps = 24/445 (5%)

Query: 17  HQPVTIERLDHQGSGLAFLHKKP----------LFVDGALPGEEVLIQLTENKSKYARGQ 66
           H    +E   H+G G+A    +P          +F+ GALPGE V  ++T +  +     
Sbjct: 14  HYVFKVEVFSHEGRGIAHYGNEPGHPVEKQGKKVFITGALPGETVQARITHHTKRLEEAD 73

Query: 67  LIKVL-KPSAERVAPFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSA 125
            +++L +PS+ R+ P C H+  CGGC LQH+    QI  KQ  L+  +  FA        
Sbjct: 74  SVQLLSEPSSYRIEPVCPHFGLCGGCSLQHMHPDEQIRFKQDVLASHLKHFAAIEPEEWL 133

Query: 126 PVC-SDDQGYRRRARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLN 184
           P   S  + YRR+AR+ + +  K Q+L+ GFR +Q+  +V++  C VL+ ++   L +L 
Sbjct: 134 PALRSTREDYRRKARIGVRFLAKEQKLKFGFRERQTNHLVSIQTCKVLDRAMAGHLNELQ 193

Query: 185 ALLSEWSQPERLGHVELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLMLEAG 244
            LL   +    +GH+EL  GD+   LV+R++  L + D  +LT +A   Q  LYL   AG
Sbjct: 194 LLLESLTAKAAIGHIELAMGDHDIALVIRNIEKLPQVDVNQLTQYALSRQWQLYLQ-PAG 252

Query: 245 ELQHVQGEAPYC--------EETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQER 296
                + + P          EE     +F P  F QVN  VN  MV  A N L + P ER
Sbjct: 253 PESLYRVDQPDASKYLHYRLEEFDIDFAFSPLDFTQVNSTVNSQMVSLACNLLNLQPGER 312

Query: 297 VLDLFCGLGNFTLPLAK---QAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQD 353
           VLDLFCGLGNF+LPLA+   +   V+ VEG ++MV+  T NA+ N++ NV FY  +L +D
Sbjct: 313 VLDLFCGLGNFSLPLARCVGETGQVIAVEGSEDMVKRGTENARSNKLLNVRFYSQDLTKD 372

Query: 354 MTSASWAQQKFAKVLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGF 413
            +S SWA+Q F  +L+DP RAGAE ++  L    AKR+VYVSCNPATLARD+  L+  G+
Sbjct: 373 FSSHSWAKQGFDALLIDPPRAGAEEVMHYLPNFNAKRIVYVSCNPATLARDAGILVEHGY 432

Query: 414 RLEKLGMLDMFPHTSHLESMALFVK 438
           RL+K G++DMF HT H+ES+ LF K
Sbjct: 433 RLKKAGVMDMFTHTGHVESIVLFEK 457