Pairwise Alignments

Query, 529 a.a., general secretion pathway protein GspA from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., FIG022606: AAA ATPase from Sphingobium sp. HT1-2

 Score =  139 bits (351), Expect = 2e-37
 Identities = 97/323 (30%), Positives = 158/323 (48%), Gaps = 15/323 (4%)

Query: 1   MYLNFFGFDELPFSIVPNARYLYLSQRHQEAIVHLQAGLGDGGGFAMLTGEVGTGKTTVA 60
           MY  F+G    PF + P+  + + S  H++A+ +L  GL  G GF ++TG++G GKTT+ 
Sbjct: 1   MYDQFYGLQGRPFQLTPDPHFYFESTTHRKALSYLGYGLAQGEGFIVITGDIGAGKTTLV 60

Query: 61  RAILASL-PGKTRAGMILNPTFSDLELLEAICDEFEVSYPKKATLKKLTQVLHEFLLAEH 119
             +++++ P +  A  I++      ++L      F ++    A  + L Q+   +L  + 
Sbjct: 61  GHLMSTIDPARLTATKIVSTQVEGDDMLRLAAQSFGLATDGVAKAQILRQI-EAYLQGQA 119

Query: 120 AQGIQVLLMIDEAQHLAPDVLEQLRLLTNLETESHKLLKVLLIGQPELQEKLRLPQLRQL 179
             G + LL++DEAQ+L    +E+LR+L+N +     LL++ L+GQPE ++ +R P+L QL
Sbjct: 120 RAGRRSLLIVDEAQNLPVSAIEELRMLSNFQLGGQSLLQIFLLGQPEFRDLVRSPELEQL 179

Query: 180 AQRITGRYHLLPLNEEQTADYIRFRIEQA--SGNPELFNRKACQWIAEQTHGIPRLINLV 237
            QR+   +HL P+  ++   YI  R+     +GNP  F   A   I   T G+PR IN +
Sbjct: 180 RQRVIATHHLDPMLPQEVEPYISHRLTLVGWTGNP-YFTDDALDAIYAATGGVPRRINAL 238

Query: 238 CD-----AALKQAYQAGEPTLSLARIKLACQEVMSFQ---SSVYQVASAKPPVPKLSYLS 289
                   AL+Q  +     +      +   E +S +    SV   A    P P      
Sbjct: 239 VSRVLLLGALEQLTEIDGQAVQAVIEDMGVDEDVSAEPIAPSVLDTAGETAPEPIAPAEP 298

Query: 290 SALGGIALAVVLAWQLPPQLDRV 312
            A      AV  AWQ P Q D V
Sbjct: 299 VAAAPAPQAV--AWQAPAQPDLV 319