Pairwise Alignments

Query, 529 a.a., general secretion pathway protein GspA from Vibrio cholerae E7946 ATCC 55056

Subject, 571 a.a., General secretion pathway protein A from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  285 bits (729), Expect = 3e-81
 Identities = 190/572 (33%), Positives = 277/572 (48%), Gaps = 49/572 (8%)

Query: 1   MYLNFFGFDELPFSIVPNARYLYLSQRHQEAIVHLQAGLGDGGGFAMLTGEVGTGKTTVA 60
           MY  FFG  + PFSI P+ RYL++S+RH+EA+ HL  G+  GGGF +L+GE+G GKTT+ 
Sbjct: 5   MYAEFFGLKQDPFSIAPDPRYLFMSERHREALAHLLYGIRGGGGFVLLSGEIGAGKTTIC 64

Query: 61  RAILASLPGKTRAGMILNPTFSDLELLEAICDEFEVSYPKK----ATLKKLTQVLHEFLL 116
           R  L  +P + R   I NP  +  +LL+ IC EF +    +    AT+K     L+E+LL
Sbjct: 65  RCFLEQIPEQCRVAYIFNPKLTVGDLLKTICSEFRIEVKHEGIGPATIKDHLDPLNEYLL 124

Query: 117 AEHAQGIQVLLMIDEAQHLAPDVLEQLRLLTNLETESHKLLKVLLIGQPELQEKLRLPQL 176
             HA+G + +L+IDEAQ+L P VLEQLRLLTNLET   KLL+++LIGQPEL+E L  P+L
Sbjct: 125 QSHARGERNVLIIDEAQNLTPHVLEQLRLLTNLETNERKLLQIILIGQPELREVLARPEL 184

Query: 177 RQLAQRITGRYHLLPLNEEQTADYIRFRIEQAS-GNPELFNRKACQWIAEQTHGIPRLIN 235
            QLAQR+  R+HL  LNE +T  YI+ R++ A    P  F+ +A Q I E   G+PR +N
Sbjct: 185 EQLAQRVIARFHLGALNEAETRQYIQHRMQVAGLRGPLPFSSQAIQRIHEIARGVPRRVN 244

Query: 236 LVCDAALKQAYQAGEPTLSLARIKLACQEVMSFQSSVYQVASAKPPVPKLSYLSSALGGI 295
           L+CD AL  AY   +  +  A ++ A  EV   ++ + +    +   P L+  +S LG +
Sbjct: 245 LLCDRALLGAYATNQARVERAVVEKAAGEVFETETPLTRPRRGQAAAP-LAAWASPLGTL 303

Query: 296 ALAVVLAWQLPPQLDRVMQHYFPLPEVVPPT----------------------------- 326
            L +V+   +   L     H  P P    P                              
Sbjct: 304 GLGLVVGALVAGALFWFWSHSAPRPTAAAPALPPAPTVAETAPATPVAAPVAPTTPADAP 363

Query: 327 -------EQRVFPQALRSALLNATSSEHALETLYAVWGYQASVLEQFCQTQADAVLWCEE 379
                  E    P    + L N T    A   L  +WG   +  +     Q   +     
Sbjct: 364 APAANRPEPLPGPPEAAALLKNET---EAWRELGPLWGQPLASGDPCAAAQQVQLQCYRT 420

Query: 380 QTGDWSTLQTYDLPAVLTLMMDDVPTYAVLYRLTGDQAELLVGGERYRIARQWLEPLWNG 439
                + L+  D P ++TL         ++  LTGD A L  G +R+R+    L  LW G
Sbjct: 421 DRMTLAGLRQLDRPGIITLRQTGGSGQVLVTALTGDSAMLQAGSQRWRMPLSALTDLWRG 480

Query: 440 QFSLLWQASFSRT--LKQGMQGADVALLESKLAQVLGEPERPREQFDKDLSRKVELFQRW 497
            F+ LW+    +T  L  G  G     L  ++A +    + P       L  +++ FQR 
Sbjct: 481 DFATLWRTPPGQTTRLVDGRTGPAADWLGKRIADLQATGKVPASA--DPLVARIQAFQRA 538

Query: 498 QNMHVDGIAGRQTLRRLELLTQQQAPSLKEEG 529
             +   G+AG  T  ++ L +    P L   G
Sbjct: 539 NGIEAAGLAGPITFMQVNLASGVDEPRLSRPG 570