Pairwise Alignments

Query, 529 a.a., general secretion pathway protein GspA from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., putative secretion ATPase, PEP-CTERM locus subfamily from Alteromonas macleodii MIT1002

 Score =  159 bits (401), Expect = 2e-43
 Identities = 86/244 (35%), Positives = 141/244 (57%), Gaps = 4/244 (1%)

Query: 1   MYLNFFGFDELPFSIVPNARYLYLSQRHQEAIVHLQAGLGDGGGFAMLTGEVGTGKTTVA 60
           MY +++G +  PF + P+  + + S+ H+ A+ +LQ GL    GF ++TG +GTGKTTVA
Sbjct: 1   MYESYYGLNSKPFQLTPDPEFFFASKWHKRAMSYLQYGLSQAEGFIVITGGIGTGKTTVA 60

Query: 61  RAILASLPGKTRAGMILNPTFSDLELLEAICDEFEVSYPKKATLKK-LTQVLHEFLLAEH 119
            ++L  +     A  I+ P  S  EL++ +  +F++  P +   K  + + L  FL   +
Sbjct: 61  NSLLEEIEDDIAAAQIVTPKLSPDELVKMVASKFDI--PTEGRSKADILKALEIFLYDLN 118

Query: 120 AQGIQVLLMIDEAQHLAPDVLEQLRLLTNLETESHKLLKVLLIGQPELQEKLRLPQLRQL 179
             G + LL++DEAQ+L  + +E+LR+L+N +     L++  L+GQ ELQ  LR P + Q 
Sbjct: 119 KAGRRALLLVDEAQNLPLETIEELRMLSNFQLNGKPLIQSFLLGQEELQPILRAPNMEQF 178

Query: 180 AQRITGRYHLLPLNEEQTADYIRFRIEQASGN-PELFNRKACQWIAEQTHGIPRLINLVC 238
            QRI    HL PL+ E+  +YI +R+  A  N  +LF+ +A + I   + GIPR IN + 
Sbjct: 179 RQRIVASCHLAPLSLEECKEYIEYRLHHAGWNGSQLFSEEAFERIHMFSRGIPRKINTLM 238

Query: 239 DAAL 242
           D  +
Sbjct: 239 DRVM 242