Pairwise Alignments

Query, 529 a.a., general secretion pathway protein GspA from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., putative secretion ATPase, PEP-CTERM locus subfamily from Alteromonas macleodii MIT1002

 Score =  172 bits (435), Expect = 2e-47
 Identities = 110/302 (36%), Positives = 161/302 (53%), Gaps = 11/302 (3%)

Query: 1   MYLNFFGFDELPFSIVPNARYLYLSQRHQEAIVHLQAGLGDGGGFAMLTGEVGTGKTTVA 60
           MY  FF F ++PFS+ PN  +      H EA+  + + L    GF  +TGEVGTGKT + 
Sbjct: 1   MYQGFFHFTDMPFSLTPNTDFFCALAPHNEALKVILSALSMSEGFIKVTGEVGTGKTLLC 60

Query: 61  RAILASLPGKTRAGMILNPTFSDLELLEAICDEFEVSYPKKATLKKLTQVLHEFLLAEHA 120
           R ++  L  K  A  + NP  S  EL +A   E  +     +  + L   +   LLA   
Sbjct: 61  RKLINHLSDKFVACYLPNPYLSPDELRQAFARELGIVTEGNSDNQGLHNAIETKLLALKK 120

Query: 121 QGIQVLLMIDEAQHLAPDVLEQLRLLTNLETESHKLLKVLLIGQPELQEKLRLPQLRQLA 180
           +G Q +L+IDEAQ L+ D LE LRL +NLETE  KLL+++L GQPEL + L  P++RQ+ 
Sbjct: 121 EGRQAVLIIDEAQSLSWDALEMLRLFSNLETEKSKLLQIVLFGQPELDDNLANPKVRQIR 180

Query: 181 QRITGRYHLLPLNEEQTADYIRFRIEQASGNPELFNRKACQWIAEQTHGIPRLINLVCDA 240
           QRI+  Y L  +   +   YI  R+  A G+ +L +R    +IA  T G PRL+N+VC  
Sbjct: 181 QRISFSYTLRTMTSAEVDYYIGHRLTTAGGDEQLISRGLRAFIALVTKGTPRLVNIVCHK 240

Query: 241 ALKQAYQAGEPTLSLARIKLACQEVMSFQSSVYQVASAKPP-VPKLSYLSSALGGIALAV 299
            L +AY  G+ + + +             S+V+     K   VP+ S +  +L  +A+A 
Sbjct: 241 ILLRAYGQGKASATWSHT----------LSAVFDTHDCKRRLVPRQSLVILSLAVVAVAS 290

Query: 300 VL 301
           VL
Sbjct: 291 VL 292