Pairwise Alignments

Query, 433 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 540 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  200 bits (508), Expect = 1e-55
 Identities = 122/345 (35%), Positives = 199/345 (57%), Gaps = 7/345 (2%)

Query: 89  LLLIVVFVVLLLFAARVMLRQTQYLSDVIKLMAQRNLSEPIKMDCKDEYGDVARELEKTR 148
           +L  ++ +++ +   R++ R         + +AQ +L++ I  +  DE G +   L   +
Sbjct: 196 VLAFLIAIIIGVLITRLITRPIAQAVQSAQRIAQGDLTQAIITERTDEAGQLLMALSDMQ 255

Query: 149 RQLQDLIKLQIDASQELTSLTEVMTMSMSETKDSAQEEFNEIDQLATAMSEMSSTVQTVA 208
             L+  +    +AS +L S  E ++    E+      + +EI Q ATA+++M++ V  VA
Sbjct: 256 GGLKSTLVEIANASDQLASAAEELSAVTDESSRGLTRQNDEIQQAATAVNQMTAAVDEVA 315

Query: 209 EHAQNASSLTENASQQAQTGQQFVKSTISKMSELSKDISSSAQAVNQVEERVVAISSVVG 268
            +A + S  +  A+ +A+ G+Q V+  +S MS +  +I+ S Q+V  +  +V  I  V+ 
Sbjct: 316 SNAVSTSEASRQATTEAEDGRQQVEQAVSGMSSMVVEINDSTQSVADLAGQVREIGKVID 375

Query: 269 TIRSISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAQRTQNATVEIQEMISQLQS 328
            IR I++QTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ +TV+I++MI  +Q+
Sbjct: 376 VIRGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQISTVDIEKMIGDVQT 435

Query: 329 SANSAVNLMEKSVVQAADGVELITNAGSELDGIVNQVQLLNDMNFQIAAAAGQQSNVAEE 388
            A+ AV  M KS+  A +   L  NAG  L  I   V  +N+ N  IA+A+ +Q+ VA E
Sbjct: 436 GADDAVAAMNKSLTWANNTQTLAQNAGEALQRITASVAKINERNLVIASASEEQAQVARE 495

Query: 389 MNENLNNVRELVEGSVTVMTELLETSEIMQSNAEELDRKITAFRV 433
           ++ NL N+++L        T+    +    +++++L R  T+F V
Sbjct: 496 VDRNLLNIQDL-------STQTAAGAHQTNASSQDLSRLATSFNV 533