Pairwise Alignments

Query, 433 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., putative methyl-accepting chemotaxis protein from Pseudomonas putida KT2440

 Score =  208 bits (529), Expect = 4e-58
 Identities = 123/329 (37%), Positives = 196/329 (59%), Gaps = 3/329 (0%)

Query: 105 VMLRQTQYLSDVIKLMAQRNLSEPIKMDCKDEYGDVARELEKTRRQLQDLIKLQIDASQE 164
           + LRQT   ++ +   A  +L++ +++  +DE G +   + +  + L++LI    D   +
Sbjct: 313 IPLRQTLRAAERV---ASGDLTQSLQVQRRDELGQLQASMHRMTQGLRELIGGIGDGVTQ 369

Query: 165 LTSLTEVMTMSMSETKDSAQEEFNEIDQLATAMSEMSSTVQTVAEHAQNASSLTENASQQ 224
           + S  E ++    +T      +  E DQ+ATAM++M++TV  VA +A+ AS     A QQ
Sbjct: 370 IASAAEELSAVTEQTSAGVNNQKVETDQVATAMNQMTATVHEVARNAEQASEAALMADQQ 429

Query: 225 AQTGQQFVKSTISKMSELSKDISSSAQAVNQVEERVVAISSVVGTIRSISEQTNLLALNA 284
           A+ G + V   ++++  L+ ++ +S++A+N ++     I SV+  I+S+++QTNLLALNA
Sbjct: 430 AREGDRVVGEAVAQIERLASEVVNSSEAMNLLKTESDKIGSVLDVIKSVAQQTNLLALNA 489

Query: 285 AIEAARAGEAGRGFAVVADEVRNLAQRTQNATVEIQEMISQLQSSANSAVNLMEKSVVQA 344
           AIEAARAGEAGRGFAVVADEVR+LAQRTQ +T EI+E+I+ LQS      ++M+ S    
Sbjct: 490 AIEAARAGEAGRGFAVVADEVRSLAQRTQQSTEEIEELIAGLQSGTQRVASVMDNSRQLT 549

Query: 345 ADGVELITNAGSELDGIVNQVQLLNDMNFQIAAAAGQQSNVAEEMNENLNNVRELVEGSV 404
              VEL   AGS L+ I   V  +  MN QIA AA +Q+ VAEE+N ++ NVR++ + + 
Sbjct: 550 DSSVELTRRAGSSLETITRTVSSIQAMNQQIATAAEEQTAVAEEINRSVMNVRDISDQTS 609

Query: 405 TVMTELLETSEIMQSNAEELDRKITAFRV 433
               E   +S  +      L   +  FR+
Sbjct: 610 AASEETASSSVELARLGTHLQGLVGRFRL 638



 Score = 47.4 bits (111), Expect = 1e-09
 Identities = 55/304 (18%), Positives = 116/304 (38%), Gaps = 16/304 (5%)

Query: 137 YGDVARELEKTRRQLQDLIKLQIDASQELTSLTEVMTMSMSETKDSAQEEFNEIDQLATA 196
           Y D   +    +   +  ++  ++    L   +++MT S +E +D+A  +   +  +AT 
Sbjct: 235 YRDAVTQFGNAQLASEQALQRMVEQGTVLLQASQMMTASQTEVRDAAAAQAKTLLTVATV 294

Query: 197 MSEMSSTVQTVAEHAQNASSL--TENASQQAQTGQQFVKSTISKMSELSKDISSS----- 249
           ++     +   A   Q    L  T  A+++  +G       + +  EL +  +S      
Sbjct: 295 LALALGLLAAWAITRQIIIPLRQTLRAAERVASGDLTQSLQVQRRDELGQLQASMHRMTQ 354

Query: 250 --AQAVNQVEERVVAISSVVGTIRSISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRN 307
              + +  + + V  I+S    + +++EQT+    N  +E  +   A         EV  
Sbjct: 355 GLRELIGGIGDGVTQIASAAEELSAVTEQTSAGVNNQKVETDQVATAMNQMTATVHEVAR 414

Query: 308 LAQRTQNATVEIQEMISQLQSSANSAVNLMEK---SVVQAADGVELI----TNAGSELDG 360
            A++   A +   +   +       AV  +E+    VV +++ + L+       GS LD 
Sbjct: 415 NAEQASEAALMADQQAREGDRVVGEAVAQIERLASEVVNSSEAMNLLKTESDKIGSVLDV 474

Query: 361 IVNQVQLLNDMNFQIAAAAGQQSNVAEEMNENLNNVRELVEGSVTVMTELLETSEIMQSN 420
           I +  Q  N +    A  A +            + VR L + +     E+ E    +QS 
Sbjct: 475 IKSVAQQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQQSTEEIEELIAGLQSG 534

Query: 421 AEEL 424
            + +
Sbjct: 535 TQRV 538