Pairwise Alignments

Query, 433 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 489 a.a., probable chemotaxis transducer from Pseudomonas sp. S08-1

 Score =  206 bits (523), Expect = 2e-57
 Identities = 132/350 (37%), Positives = 199/350 (56%), Gaps = 7/350 (2%)

Query: 90  LLIVVFVVLLLFAARVMLR----QTQYLSDVIKLMAQRN--LSEPIKMDCKDEYGDVARE 143
           L +   ++LLL A+++++R        L DV+ L  +R+  L+   ++D +DE G +A  
Sbjct: 141 LCVFALMLLLLGASQLLIRFILSHLNRLKDVM-LHVERSGDLAARAELDSRDEVGQMANA 199

Query: 144 LEKTRRQLQDLIKLQIDASQELTSLTEVMTMSMSETKDSAQEEFNEIDQLATAMSEMSST 203
               +   Q ++     A+  L      +  SM + +     + +E DQ ATA++EMS+T
Sbjct: 200 FNAMQAGYQRVVGTVAQAAASLDEGARRLAASMEQVRGGMLGQQSETDQAATAINEMSTT 259

Query: 204 VQTVAEHAQNASSLTENASQQAQTGQQFVKSTISKMSELSKDISSSAQAVNQVEERVVAI 263
           V  +A+HA +    +  A + +  GQQ V      ++ LS+ +  +A+ + Q+ E    I
Sbjct: 260 VHHIAQHAADTRDQSTEADRLSGVGQQVVGRASQAIAGLSQGVQQTAEMIQQLAEDSRTI 319

Query: 264 SSVVGTIRSISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAQRTQNATVEIQEMI 323
            S+V TI  I+EQTNLLALNAAIEAARAG+ GRGFAVVADEVRNLA+R Q++T EI  MI
Sbjct: 320 GSMVETIHGIAEQTNLLALNAAIEAARAGDMGRGFAVVADEVRNLAKRVQDSTDEITRMI 379

Query: 324 SQLQSSANSAVNLMEKSVVQAADGVELITNAGSELDGIVNQVQLLNDMNFQIAAAAGQQS 383
             LQS++  AV  M++S ++A   V+    AG  L  I   V L+ + N QIA AA QQS
Sbjct: 380 GNLQSASRDAVEFMQESSLKADQCVQEAGAAGEALGHIAQAVALMRESNTQIAVAAEQQS 439

Query: 384 NVAEEMNENLNNVRELVEGSVTVMTELLETSEIMQSNAEELDRKITAFRV 433
            VAEEM  ++  +R++ E +V        TS  + S A+EL R I   ++
Sbjct: 440 QVAEEMTRSVVGIRDVTEQTVQQTLASASTSAELVSLADELGRAIRRLKL 489