Pairwise Alignments

Query, 433 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 539 a.a., Methyl-accepting chemotaxis protein 4 from Alteromonas macleodii MIT1002

 Score =  193 bits (490), Expect = 1e-53
 Identities = 123/353 (34%), Positives = 197/353 (55%), Gaps = 7/353 (1%)

Query: 88  TLLLIVVFVVLLLFAARVMLRQ--TQYLSDVIKLM---AQRNLSEPIKMDCK--DEYGDV 140
           T +++ V V +LLF   V + +   Q + DV++ +   AQ N    ++++ K  DE G++
Sbjct: 187 TGVILAVVVTILLFGTAVPIVRGIKQSIDDVVRSLKDIAQENGDLTVRIETKSEDEIGEL 246

Query: 141 ARELEKTRRQLQDLIKLQIDASQELTSLTEVMTMSMSETKDSAQEEFNEIDQLATAMSEM 200
                +   +LQ +++  ++AS  L++L + +     ET+ +   +         A+  M
Sbjct: 247 VYWFNQFMDKLQGVVRDVVEASLPLSNLAQNLRGVTEETQRTIDVQQKSATNAKRAVDTM 306

Query: 201 SSTVQTVAEHAQNASSLTENASQQAQTGQQFVKSTISKMSELSKDISSSAQAVNQVEERV 260
           S +V  VA  A  A+S    A+  A+ G+Q V+ T++ + +L++++  +A  + ++E   
Sbjct: 307 SGSVDGVAHSAAQAASDANEATTAAREGRQIVQQTVTSIQQLAENVRETADVIARLESDS 366

Query: 261 VAISSVVGTIRSISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAQRTQNATVEIQ 320
             + SV+  I+ I+EQTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ +T EIQ
Sbjct: 367 NKVGSVLDVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQQSTEEIQ 426

Query: 321 EMISQLQSSANSAVNLMEKSVVQAADGVELITNAGSELDGIVNQVQLLNDMNFQIAAAAG 380
             I QLQ++A+SAV +M +   QA   VE    AGS L+ I + +  +N MN QIA    
Sbjct: 427 STIEQLQNAAHSAVEVMSRGTEQATSSVETANKAGSSLETITSTIGRINQMNEQIAHNTE 486

Query: 381 QQSNVAEEMNENLNNVRELVEGSVTVMTELLETSEIMQSNAEELDRKITAFRV 433
            Q  VA ++  +++ + E  E + +   EL      +   A+ L+     FRV
Sbjct: 487 DQRTVAVDIVRHVDEIHERTEQTASRSGELGSMCNELADLAQHLESIAKQFRV 539



 Score = 36.6 bits (83), Expect = 2e-06
 Identities = 55/296 (18%), Positives = 114/296 (38%), Gaps = 48/296 (16%)

Query: 159 IDASQELTSLTEVMTMSMSETKDSAQEEFNE----IDQLATAMSEMSSTVQTVAEHAQNA 214
           +D  +   +L   +T    +T   AQE   E    ++Q+A+   E  S +  ++    N 
Sbjct: 61  VDMQKVRDTLASAVTTGDEDTLTMAQELAEEAKSGLNQIASISPEFRSEISRISSGFDNY 120

Query: 215 SSLTENASQQAQTGQQFVKSTISKMSELSKDISSS----AQAVNQVEERVVAI------- 263
             +  + SQ    G     +  S++ ELS  ++ S      A++Q  +   A        
Sbjct: 121 FDVAYDVSQSMVNG----TADFSRLGELSAQMNQSYDGAIAAMSQFRDAQQAAFEEAFKN 176

Query: 264 -----SSVVGTIRSISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAQRTQNATVE 318
                +S++ T   ++    +L    A+   R     +    V   ++++AQ   + TV 
Sbjct: 177 TDSANTSLISTGVILAVVVTILLFGTAVPIVRG--IKQSIDDVVRSLKDIAQENGDLTVR 234

Query: 319 I----QEMISQLQSSANSAVNLMEKSVVQAADGVELITNAGSELDGIVNQVQLLNDMNFQ 374
           I    ++ I +L    N  ++ ++  V    +    ++N    L G+  + Q   D+  +
Sbjct: 235 IETKSEDEIGELVYWFNQFMDKLQGVVRDVVEASLPLSNLAQNLRGVTEETQRTIDVQQK 294

Query: 375 ------------------IAAAAGQQSNVAEEMNENLNNVRELVEGSVTVMTELLE 412
                             +A +A Q ++ A E        R++V+ +VT + +L E
Sbjct: 295 SATNAKRAVDTMSGSVDGVAHSAAQAASDANEATTAAREGRQIVQQTVTSIQQLAE 350