Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., type I secretion protein TolC from Pseudomonas simiae WCS417

 Score = 75.5 bits (184), Expect = 3e-18
 Identities = 98/430 (22%), Positives = 173/430 (40%), Gaps = 38/430 (8%)

Query: 1   MKKLLPLFVSAALGTLSSAVWAENLA--EIYNQAKENDPQLLSVAAQRDAAFEAVTSSRS 58
           +KKLL    +  L  ++SA  A+ L        A  N+P L   AAQ +         ++
Sbjct: 5   VKKLLG---AGVLWVVASAAQAQTLTLDSALQTAFANNPDL--AAAQWEIDIAQGGRQQA 59

Query: 59  ALLPQINLTAGYNINRSDQAPRESDLLSAGINFSQELYQRSSWVSLDTAEKKARQADSQY 118
            L+P  N  A +++   +   R+S   S  I+ + EL  +     +D A +    A    
Sbjct: 60  GLIP--NPVASWDV---EDTRRDSRTTSIKISQALELGGKRG-ARIDVASRVQDAAALTL 113

Query: 119 AATQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQ 178
              +  L   V   Y+  LRAQ+ L+  +       R L     R   G ++  +   AQ
Sbjct: 114 EQRRNSLRAEVIDNYYGALRAQERLDLAQRSMTLAERGLVVANGRVTAGKASPVEATRAQ 173

Query: 179 AQFDGVLADEVLAENSLTNSYEALREITGQEYSKLAVLDTKRFAASRTTESSEALIEKAQ 238
            Q   +  +   A+  LT++Y  L   TG        + T+  +      +++ L    Q
Sbjct: 174 VQLSEIRLERDRAQMGLTDAYRRLAASTGSAAPNFQAVATRNPSTLAVPSATQLLARLEQ 233

Query: 239 QQNLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDNAKNTSGEEYNDFKI 298
              L L    I Q  A  +I L  +  +P L +  G  Y  +  +              +
Sbjct: 234 TAELRLAELSILQYEA--SIGLEKAQRIPDLDVSIGSQYDASVRERVS----------LV 281

Query: 299 GVNLKVPLYTG--GNTTSLTKQAEFAYV---AASQDLEAAYRSVVKDVRAYNNNINASIG 353
           GV++ +PL+    GN  + T++A+ A     A    L    R  V   ++ N  +     
Sbjct: 282 GVSMPIPLFNRNQGNVLAATRRADQARDLRNATELRLRTETRQAVDLWQSANTEV----- 336

Query: 354 ALRAYEQAVI-SAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNLSNARYDYILSVL 412
             R + Q ++ +A+SA+++   GF++G  + +DVLDA R L  A      A      + +
Sbjct: 337 --RVFNQQILPAAQSAVDSATRGFEMGKFSFLDVLDAQRTLIAARTQYLTATAQATDAWV 394

Query: 413 QLRQAIGTLS 422
           ++ +  G L+
Sbjct: 395 RIERIYGDLA 404