Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., channel protein TolC from Pseudomonas simiae WCS417

 Score =  260 bits (664), Expect = 7e-74
 Identities = 167/453 (36%), Positives = 249/453 (54%), Gaps = 25/453 (5%)

Query: 2   KKLLPLFVSAALGTLSSAVWAE--------NLAEIYNQAKENDPQLLSVAAQRDAAFEAV 53
           K  L L VS A   +   VWA         +L  +Y +A +N+  L +  AQ  A  E V
Sbjct: 4   KLSLALAVSCATNGM---VWAAEAPLSANTDLVSVYQEAVDNNADLAAARAQYGAQKEVV 60

Query: 54  TSSRSALLPQINLTAGYNINR------SDQAPRESDLLSAGINFSQELYQRSSWVSLDTA 107
             +R+ LLP  NLT G +IN       +  A    D  S     SQ L++   W  L  A
Sbjct: 61  PQARAGLLP--NLTGGADINNVRTQIDTPAATANRDAHSWRATLSQPLFRADRWFQLQAA 118

Query: 108 EKKARQADSQYAATQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVG 167
           E    QA  Q +AT+Q LIL+ A+ YF VLRAQDNL   +AE+ A  RQL+Q+ +RF+VG
Sbjct: 119 EATNEQAALQLSATEQNLILQSAENYFAVLRAQDNLASTKAEENAFKRQLDQSNERFDVG 178

Query: 168 LSAITDVHDAQAQFDGVLADEVLAENSLTNSYEALREITGQEYSKLAVLDTKRFAASRTT 227
           LS  TDV  +QA +D   A+ +LA+  + +++EAL  +T ++Y+ +  +           
Sbjct: 179 LSDKTDVLQSQASYDTARANRILAQRQVEDAFEALITLTNRQYNSIQGIVHTLPVLPPLP 238

Query: 228 ESSEALIEKAQQQNLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNN-----SN 282
             ++A +E A +QNL+LLA+  +   A + +    +GH P+L     Y  G+N     SN
Sbjct: 239 NDAKAWVETAGRQNLNLLASNYAVTAAEETLKQRKAGHAPTLDAVAQYEKGDNDALGFSN 298

Query: 283 DNAKNTSGE-EYNDFKIGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDV 341
            NA  T    +     IG+ L +P+Y+GG T+S  +++        Q  E   R VV++ 
Sbjct: 299 PNAFGTPYRGDVEQRTIGLRLSIPIYSGGLTSSQVRESYSRLGQTEQQREGLRRQVVENT 358

Query: 342 RAYNNNINASIGALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNLS 401
           R  +  +N  +  ++A  Q++IS +SA+EATE G+ VGTR IVDVLD+ R+LY + +N +
Sbjct: 359 RNLHRAVNTDVEQVQARRQSIISNQSAVEATEIGYQVGTRNIVDVLDSQRQLYASVRNYN 418

Query: 402 NARYDYILSVLQLRQAIGTLSEQDVMDVNAGLK 434
           N+RYDYIL  L+L+QA GTL+  D+ D+   LK
Sbjct: 419 NSRYDYILDNLRLKQAAGTLNPGDLQDLARYLK 451