Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., transporter from Pseudomonas simiae WCS417

 Score = 72.8 bits (177), Expect = 2e-17
 Identities = 73/309 (23%), Positives = 139/309 (44%), Gaps = 21/309 (6%)

Query: 120 ATQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGR--QLEQTKQRFEVGLSAITDVHDA 177
           +TQ  L+  VA A+  +  A DN   + A++    +    + T++ + +G S+   V  A
Sbjct: 163 STQISLVAEVATAWLTL--AADNERLLLAQETLTSQLATYDLTQRSYALGGSSALSVAQA 220

Query: 178 QAQFDGVLADEVLAENSLTNSYEALREITGQEYSKLAVLDTKRFAASRTTESSEALIEKA 237
           Q   +    D    E+ +     ALR + G +  +  +  T+  +A+   +    L    
Sbjct: 221 QTTVESARGDVASYESQILQDRNALRLLVGSDLPEALLPGTRLESAAVLVDIPAGLPSSL 280

Query: 238 QQQNLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDNA---KNTSGEEYN 294
            QQ   +L+A  +   A  +I  A +   PS++L    N G++S+  A   K+ SG    
Sbjct: 281 LQQRPDVLSAEHTLKSANIDIGAARAAFYPSISLTA--NAGSSSSALAGLFKSGSGA--- 335

Query: 295 DFKIGVNLKVPLYTGGNTTSLTKQA----EFAYVAASQDLEAAYRSVVKDVRAYNNNINA 350
            +    ++ VP++ GG+  +    A    E       Q L+ A+R V  D  A  + ++ 
Sbjct: 336 -WTFAPSISVPIFDGGSNRATLDSAKVEREIQLQTYQQTLQTAFREVA-DALAVRSTLDR 393

Query: 351 SIGALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNLSNARYDYILS 410
            I A +A   A   ++ + E ++A +  G+++ ++ LDA R LY A ++L   R     +
Sbjct: 394 RIAAQQALTDA---SRKSFELSDALYRGGSQSYLEALDAQRSLYSAQQDLITLRLTEQSN 450

Query: 411 VLQLRQAIG 419
            + L + +G
Sbjct: 451 RITLYKVLG 459