Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

 Score = 89.7 bits (221), Expect = 2e-22
 Identities = 84/419 (20%), Positives = 166/419 (39%), Gaps = 17/419 (4%)

Query: 17  SSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALLPQINLTAGYNINRSD 76
           SS+ +A ++ + + QAK+  P           + +    ++S LLP ++ +AG N + S 
Sbjct: 17  SSSAFALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGSAGMNWSESQ 76

Query: 77  QAPRESDLLSAGINFSQELYQRSSWVSLDTAEKKARQADSQYAATQQGLILRVAKAYFEV 136
                    S G    Q L+    W +LD A+     A  +       L  ++  AYF +
Sbjct: 77  NGSS-----SYGATIEQTLWDSRKWSALDKADADWVLAQLERNQAYNQLAHQLLSAYFAL 131

Query: 137 LRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQAQFDGVLADEVLAENSLT 196
             AQ NL   + ++A   + L   +QR+  G     ++ + +       +  + A+  L 
Sbjct: 132 AEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRVNQLDEESTILNAQAELE 191

Query: 197 NSYEALREITGQEYSKLAVLDTKRFAASRTTESS-EALIEKAQQQNLSLLAARISQDVAR 255
                L  +      ++  +DT+    S    +  +  +  A+  +  LL A     +++
Sbjct: 192 TKRSQLSILINASAPQVDEVDTQTPTPSWPFSAELDDWLTAAKDHSPELLIAIQKVAISQ 251

Query: 256 DNISLASSGHLPSLTLDGGYNYGNNSNDNAKNTSGEEYNDFKIGVNLKVPLYTGGNTTSL 315
                + SG+ PSL    GY  G+  N            +F  G+ L +P+   G T S 
Sbjct: 252 IAKQQSQSGYYPSLRASAGYQDGDQRN-----------GEFNAGLTLSIPIDLNGATRSD 300

Query: 316 TKQAEFAYVAASQDLEAAYRSVVKDVRAYNNNINASIGALRAYEQAVISAKSALEATEAG 375
            ++A   ++ A Q        + +++R     +      +   +Q V      L + +  
Sbjct: 301 NEKAHLNWLMAQQQQRKVEIGLHQNLRQQIQQVEIEWQQITMADQQVTHRDKVLRSKQQL 360

Query: 376 FDVGTRTIVDVLDATRRLYDANKNLSNARYDYILSVLQLRQAIGTLSEQDVMDVNAGLK 434
           FD G     D++D    L+ A  NL++  Y Y    ++L +  G L++  +  ++   +
Sbjct: 361 FDAGLAEASDLIDVHNSLFRAKHNLASRWYSYWRQRIELLKLTGQLNDNAIAQLSGAFR 419



 Score = 32.3 bits (72), Expect = 3e-05
 Identities = 42/210 (20%), Positives = 80/210 (38%), Gaps = 12/210 (5%)

Query: 215 VLDTKRFAASRTTESSEALIEKAQQQNLSLLAARISQDVARDNISLASSGHLPSLTLDGG 274
           VL +   ++S    S E   ++A+QQ+     A +S  ++  +  LA S  LPSL+   G
Sbjct: 10  VLTSLMASSSAFALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGSAG 69

Query: 275 YNYGNNSNDNAKNTSGEEYNDFKIGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAY 334
            N+  + N ++             G  ++  L+     ++L K A+  +V A  +   AY
Sbjct: 70  MNWSESQNGSS-----------SYGATIEQTLWDSRKWSALDK-ADADWVLAQLERNQAY 117

Query: 335 RSVVKDVRAYNNNINASIGALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLY 394
             +   + +    +  +   L   +Q        L   E  +  G    V++ +      
Sbjct: 118 NQLAHQLLSAYFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRVNQL 177

Query: 395 DANKNLSNARYDYILSVLQLRQAIGTLSEQ 424
           D    + NA+ +      QL   I   + Q
Sbjct: 178 DEESTILNAQAELETKRSQLSILINASAPQ 207