Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., Type I secretion outer membrane protein, TolC family from Sphingobium sp. HT1-2

 Score =  165 bits (418), Expect = 2e-45
 Identities = 130/442 (29%), Positives = 197/442 (44%), Gaps = 15/442 (3%)

Query: 7   LFVSAALGTLSSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALLPQINL 66
           LF+  A   L+    A +L E +  A  +DP  L   A+RDA  EA   +R+   P + L
Sbjct: 4   LFLCTAAAMLAPPAHATDLMEAWQAAAAHDPDHLGAQAERDAGQEAAVQARALKRPSVQL 63

Query: 67  TAGYNINRSDQ-------------APRESDLLSAGINFSQELYQRSSWVSLDTAEKKARQ 113
             GY  N ++                R S   + G+   Q LY  S         +KA  
Sbjct: 64  QGGYQYNVTETNARFPEELDPVFTGSRSSGRATVGVQAVQPLYDASKHAQSIQLREKAAG 123

Query: 114 ADSQYAATQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITD 173
           AD Q+A  QQ LILRV++AYF+VL A+D L   +A+  A  +Q    + RF+ G + ITD
Sbjct: 124 ADVQFAGEQQQLILRVSQAYFKVLAAEDRLSSYQAQVDAAEQQRRGAQARFDAGRARITD 183

Query: 174 VHDAQAQFDGVLADEVLAENSLTNSYEALREITGQEYSKLAVLDTKRFAASRTTESSEAL 233
           V +A+A+ D   A  + AE  L  +     E+TG     L       FAA     + EA 
Sbjct: 184 VREAEARRDASEAQRIGAEAELAYARADFSELTGLPAEGLD-RPAGNFAAPLPLVTLEAS 242

Query: 234 IEKAQQQNLSLLAARISQDVARDNISLASSGHLPSLTLDGGY-NYGNNSNDNAKNTSGEE 292
           IE+A++Q+  + AA      A  +I        P +    GY        +       + 
Sbjct: 243 IEQAERQSPLVKAAEHQAKAAGADIDRYGLTGRPVVEGVAGYQGQYRLGGEGGNGIIPDR 302

Query: 293 YNDFKIGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDVRAYNNNINASI 352
                 G+ + +PLY GG   S  ++A    V A + L+AA R      +   + ++   
Sbjct: 303 IQSASAGLRITIPLYAGGAIQSKEREARANAVKAERALDAARRDARLQAQQAWHAVSTGA 362

Query: 353 GALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNLSNARYDYILSVL 412
             + A   A  SA    +A   G +VG RT  DVL+A  + +  +++   A YDY+ + L
Sbjct: 363 RRIAALNTANRSAGLQQDAANTGREVGIRTQDDVLNAQSQSFSTDRDRRQAIYDYMTARL 422

Query: 413 QLRQAIGTLSEQDVMDVNAGLK 434
           QL  A G L ++ +  VNA +K
Sbjct: 423 QLAAATGDLGDETLAGVNALMK 444