Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., Outer membrane efflux protein from Pseudomonas putida KT2440

 Score =  262 bits (669), Expect = 2e-74
 Identities = 164/454 (36%), Positives = 257/454 (56%), Gaps = 23/454 (5%)

Query: 1   MKKLLPLFVSAALGTLSSAVWAEN--------LAEIYNQAKENDPQLLSVAAQRDAAFEA 52
           M + L L ++ +  + +  VWA +        L  +Y +A +N+  L +  A   A  E 
Sbjct: 1   MLRKLSLAIAVSCAS-NGVVWAADVPSTVKTDLVSVYQEAVDNNADLAAARADYGARREV 59

Query: 53  VTSSRSALLPQINLTAGYNINRSDQAPRESDLLS--AGINFS----QELYQRSSWVSLDT 106
           V  +R+ LLP  NL+AG  +  +     E  + S  +G ++S    Q +++   W  L  
Sbjct: 60  VPQARAGLLP--NLSAGAEMMNTRTKLDEPSITSNRSGNSWSATLAQPIFRADRWFQLQA 117

Query: 107 AEKKARQADSQYAATQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEV 166
           AE    QA  + +AT+Q LIL+ A+ YF VLRAQDNL   +AE+AA  RQL+Q+ +RF+V
Sbjct: 118 AEAVNEQAALELSATEQNLILQTAQNYFAVLRAQDNLAATKAEEAAFKRQLDQSNERFDV 177

Query: 167 GLSAITDVHDAQAQFDGVLADEVLAENSLTNSYEALREITGQEYSKLAVLDTKRFAASRT 226
           GLS  TDV  +QA +D   A+ ++AE  + +++EAL  +T +EY+ +  +         T
Sbjct: 178 GLSDKTDVLQSQASYDTARANRIIAERQVQDAFEALVTLTNREYTSIQGVVHSLPVQVPT 237

Query: 227 TESSEALIEKAQQQNLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDNAK 286
              ++A +E A +QNL+LLA   +   A + +    +GH P+L     Y  G+N +    
Sbjct: 238 PNDAKAWVETAGRQNLNLLATNYAVSAAEETLRQRKAGHAPTLDAVAKYQKGDNDSLGFT 297

Query: 287 NTS--GEEYN----DFKIGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKD 340
           N S  G  Y+       +G+ L +P+Y+GG T+S  ++A      + Q  E+  R VV++
Sbjct: 298 NPSQLGVRYSGDVEQTSVGLQLNIPIYSGGLTSSQVREAYQRLSQSEQQRESLRRQVVEN 357

Query: 341 VRAYNNNINASIGALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNL 400
            R  +  +N  +  ++A +Q++IS +SALEATE G+ VGTR IVDVLDA R+LY + ++ 
Sbjct: 358 TRNLHRAVNTDVEQVQARKQSIISNQSALEATEIGYQVGTRNIVDVLDAQRQLYTSVRDY 417

Query: 401 SNARYDYILSVLQLRQAIGTLSEQDVMDVNAGLK 434
           +N+RYDYIL  L L+QA GTLS QD+ D+   LK
Sbjct: 418 NNSRYDYILDNLSLKQAAGTLSPQDLQDLKRYLK 451