Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., putative Outer membrane efflux protein from Pseudomonas putida KT2440

 Score =  177 bits (448), Expect = 8e-49
 Identities = 123/432 (28%), Positives = 218/432 (50%), Gaps = 11/432 (2%)

Query: 6   PLFVSAALGTLSSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALLPQIN 65
           P  +   LG    A  A +L + ++  +   P   +   ++ A  E      + LLPQIN
Sbjct: 14  PCLMVCLLGVAVQAS-AMDLKQAWDLLQYQGPIYRAAVHEKQAGGENRAIGEAGLLPQIN 72

Query: 66  LTAGYN-INRSD-QAPRESDL----LSAGINFSQELYQRSSWVSLDTAEKKARQADSQYA 119
            +A +N +N S  Q  +++DL      A +   Q L+ +         +++A  + + + 
Sbjct: 73  ASAYFNQVNGSQRQNGQDNDLDYDSKGANVRLRQPLFNKQKMAEYRQGQQRADYSVAVFD 132

Query: 120 ATQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQA 179
           A  Q   +R+A AYF+VL A + +   +A+ +A   QL   K+R E+G   ITDV ++ A
Sbjct: 133 AKSQDAAVRLADAYFDVLLASETITLAKAKLSAFEEQLASAKRRMELGAGTITDVDESVA 192

Query: 180 QFDGVLADEVLAENSLTNSYEALREITGQEYSKLAVLDTKRFAASRTTESSEALIEKAQQ 239
           + D   AD + A+++L N+   L E  G+    L  L            + +  + KAQ 
Sbjct: 193 RRDLAEADLIDAQDNLVNARRKLEEYIGETPQALTTLQAGFSTPPLMPGNLQEWLVKAQA 252

Query: 240 QNLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDNAKNTSGEEYNDFKIG 299
            +  + A R S  +A + ++ A SGH P+L    GY  G++ + +  N   +  +   IG
Sbjct: 253 DSPLIHARRHSYALAEEEVNRARSGHYPTLDFVAGYTAGSSQSISELN---QRNHYSSIG 309

Query: 300 VNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDVRAYNNNINASIGALRAYE 359
           + L +PLY+GG+T++L++QA      A  +L+A  + V+ +       + +    ++A E
Sbjct: 310 LELNIPLYSGGSTSALSRQASANSSKALDELDATRQEVISNTTREYRGVQSGALRIQALE 369

Query: 360 QAVISAKSALEATEAGF-DVGTRTIVDVLDATRRLYDANKNLSNARYDYILSVLQLRQAI 418
           +AV S + +L +T  GF + GT T  DVL+A   LYDA  +L  A+ +Y++S L+L  ++
Sbjct: 370 KAVASNERSLTSTRKGFKEGGTSTNSDVLNAEELLYDARHDLFEAKLNYLMSRLRLASSV 429

Query: 419 GTLSEQDVMDVN 430
           G+L + D+  +N
Sbjct: 430 GSLGDDDIEQIN 441