Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., hypothetical protein from Pseudomonas sp. DMC3

 Score = 79.0 bits (193), Expect = 3e-19
 Identities = 89/372 (23%), Positives = 165/372 (44%), Gaps = 39/372 (10%)

Query: 51  EAVTSSRSALLPQIN------LTAGYNINRSDQAPRESDLLSAGINFSQELYQRSSWVSL 104
           E V  + S   PQ+        T+GY  +   Q        S  I+  Q LY     VS 
Sbjct: 97  EGVNVAESGYYPQVTGGIKGGYTSGYGSDAGSQ--------SVNISLKQMLYDFGK-VSS 147

Query: 105 DTAEKKARQADSQYAATQQGLILRV-------AKAYFEVLRAQDNLEFVRAEKAAVGRQL 157
                +AR A SQ      G++L +       A+AY EV R Q  LE  R +   +G  +
Sbjct: 148 SVDAARARVARSQ-----AGILLAIDDIARDTARAYIEVQRYQRLLEVAREQIQGIGGIV 202

Query: 158 EQTKQRFEVGLSAITDVHDAQAQFDGVLADEVLAENSLTNSYEALREITGQEYSKLAVLD 217
           +  KQR ++G S  +D+  AQ++ +G  A     +         L  + G+  +  AV D
Sbjct: 203 DLAKQRSDMGASTRSDMVQAQSRAEGATATLQEFKAQYARWQATLTSLLGRR-TPPAVSD 261

Query: 218 TKRFAASRTTESSEALIEKAQQQNLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNY 277
               AA   T++ +A   +      ++L A   +  A+  ++ A +   P+L+L    N 
Sbjct: 262 A---AAPTLTQACDA--SQISDTLPAVLQAAAQRTQAQAELAQAKAEAYPTLSLQPSVNQ 316

Query: 278 GNNSNDNAKNTSGEEYNDFKIGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAA---Y 334
             + + + +N+  +      I +NL+VP+Y GG  ++ ++ A  A  AA    + A    
Sbjct: 317 YLDDHYDDQNSRADR-TQVGIFLNLEVPIYQGGAISARSRAAGHALTAADSAEDFARLQA 375

Query: 335 RSVVKDVRAYNNNINASIGALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLY 394
           R  + + +A  + +N  + +L   + ++  A+  +       ++GTR ++D+L+A + ++
Sbjct: 376 RQGLAEAQAQTSGLNRRLRSLEFRQTSITEAR--MLYGRQYLELGTRPLLDLLNAEQEIH 433

Query: 395 DANKNLSNARYD 406
            +  +L N + D
Sbjct: 434 QSRFDLVNTQAD 445