Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 553 a.a., hypothetical protein from Magnetospirillum magneticum AMB-1

 Score = 79.3 bits (194), Expect = 3e-19
 Identities = 86/412 (20%), Positives = 172/412 (41%), Gaps = 15/412 (3%)

Query: 34  ENDPQLLSVAAQRDAAFEAVTSSRSALLPQINLTAGYNINRSDQAPRESDLLS---AGIN 90
           +  P++ S   + +AA + V  +     P + LT      R  +   ++ + S     + 
Sbjct: 39  DTHPRIASARHEMNAAAQQVKEAVGKWFPDLELTEDAGRERYHRDATKNTVASFHQLDVR 98

Query: 91  FSQELYQRSSW-VSLDTAEKKARQADSQYAATQQGLILRVAKAYFEVLRAQDNLEFVRAE 149
            +Q+++        +  AE + + A   + A +  +I     +Y  ++++   L++ +  
Sbjct: 99  LTQKIWDFGKTNADIRAAEYRWKAAKENFRAAEHTIIYDAVLSYLNLMKSYRILDYSKKS 158

Query: 150 KAAVGRQLEQTKQRFEVGLSAITDVHDAQAQFDGVLADEVLAENSLTNSYEALREITGQE 209
           +  + RQ          G    TDV  A+AQ  G  A  V AE  +  +    + +  ++
Sbjct: 159 EENIKRQANLESAMVVSGRGYQTDVLQAKAQLSGAEARRVRAEGVIDQAVSHYQAVFLRD 218

Query: 210 YSKLAVLDTKRFAASRTTESSEALIEKAQQQNLSLLAARISQDVARDN-ISLASSGHLPS 268
               + +   R    +   S E  IE A +QN  L +AR++   A++  +S+A+  + P 
Sbjct: 219 PPAESQMALPRSPDEKLYRSREQAIEAALRQNPQLASARMTSRSAKETALSVAADKYTPV 278

Query: 269 LTLDGGYNYGNNSNDNAKNTSGEEYNDFKIGVNLKVPL-YTGGNTTSLTKQAEFAYVAAS 327
           +    G     + N+ A     +     K+ ++    L +T  N+ S   +   A VA  
Sbjct: 279 VK---GIVESTHKNNVAGLMGYQSDQVAKVQISFPFNLGFTAMNSVSAAVETHSATVAKE 335

Query: 328 QDLEAAYRSVVKDVRAYNNNINASIGALRAYEQAVISAKSALEATEAGFDVGTRTIVDVL 387
             +  +    VK +    +    + G L  + QA +S +  LE       +  R+++D+L
Sbjct: 336 GTVRISLEEQVKGLFKNLDVQKKNAGLL--HNQATLS-EQFLEMAREERKINRRSLIDIL 392

Query: 388 DATRRLYDANKNLSNARYDYILSVLQLRQAIGTLSE---QDVMDVNAGLKVA 436
               +LY+A  +  +A  D I+S   L QA G L+    +++   NAG  +A
Sbjct: 393 QGETQLYNAESDAYSADIDVIISTFALLQATGDLTSDLLEELTGANAGASIA 444