Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., membrane protein from Magnetospirillum magneticum AMB-1

 Score =  124 bits (312), Expect = 5e-33
 Identities = 108/434 (24%), Positives = 193/434 (44%), Gaps = 21/434 (4%)

Query: 1   MKKLLPLFVSAALGTL--SSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRS 58
           M+K+    + AA   +  S+   +E L E+      ++P LL+  A+  +  E V  + S
Sbjct: 1   MRKVSCRLIGAACMVVAASTPAMSETLEEVLASTYSSNPTLLARRAKLRSTDEGVPQALS 60

Query: 59  ALLPQINLTAG-----YNINRSDQAPRESDLLSAGINFSQELYQRSSWVSLDT-AEKKAR 112
              P ++LT       Y+ N            +  +  SQ L++    ++    AE    
Sbjct: 61  NWRPTVSLTGSVGRGSYDNNTLSPYSMSRTPRTQALTLSQPLFRGGRTLAATAQAENNVL 120

Query: 113 QADSQYAATQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAIT 172
              +Q AAT+Q ++L  A AY  V+R    L+     +  + RQ E T++RF+VG    T
Sbjct: 121 SERAQLAATEQTILLAAATAYLNVVRDDAVLKLSINNEQVLRRQYEATEERFKVGELTRT 180

Query: 173 DVHDAQAQFDGVLADEVLAENSLTNSYEALREITGQEYSKLAVLDTKRFAASRTTESSEA 232
           DV  A+A+     AD V AE +L +S        G+    L              +S + 
Sbjct: 181 DVSQAEARLAKATADRVAAEGNLQSSRANYVNNVGRPPEALVT----PAQPPALPQSLDD 236

Query: 233 LIEKAQQQNLSLLAARISQDVARDNISLASSGHLP--SLTLDGGYNYGNNSNDNAKNTSG 290
           +   A   N ++++A  +   A+D + L     LP  SL+ D   N+  ++ +N+     
Sbjct: 237 VTSTALAANPTVVSADFTHAAAKDGVDLVFGELLPTVSLSADISRNFETSTRENSSTAR- 295

Query: 291 EEYNDFKIGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDVRAYNNNINA 350
                 ++ +N+ VPLY  G+  S  + ++        + + A R  V+        + A
Sbjct: 296 ------EVLLNVSVPLYESGSVYSRVRASKHTAGQRRIEADQARRDAVETGTKSWETLQA 349

Query: 351 SIGALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNLSNARYDYILS 410
           +    R+Y+  + +++ AL        VG+RTI+DVL+A + L+DA  NL  A+ D +  
Sbjct: 350 ARAQARSYQAQIKASELALAGVREESKVGSRTILDVLNAEQELFDARVNLVKAQRDVLAG 409

Query: 411 VLQLRQAIGTLSEQ 424
             Q++ A+G ++ Q
Sbjct: 410 AYQVKSALGQMTAQ 423