Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 489 a.a., Type I secretion outer membrane protein, TolC precursor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  380 bits (976), Expect = e-110
 Identities = 210/440 (47%), Positives = 293/440 (66%), Gaps = 9/440 (2%)

Query: 1   MKKLLPLFVSAALGTLSSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSAL 60
           MKKLLP+ +  +L   S+   AENL ++Y QA+ ++P+L   AA RDAAFE +  +RS L
Sbjct: 1   MKKLLPILIGLSLSGFSTLSQAENLMQVYQQARLSNPELRKSAADRDAAFEKINEARSPL 60

Query: 61  LPQINLTAGYNINRS--DQAPRESDLLSAGINFSQELYQRSSWVSLDTAEKKARQADSQY 118
           LPQ+ L A Y  +    D     S+  SA +  +Q L+  S W  L   EK A   D  Y
Sbjct: 61  LPQLGLGADYTYSNGYRDANGINSNETSASLQLTQTLFDMSKWRGLTLQEKAAGIQDVTY 120

Query: 119 AATQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQ 178
              QQ LIL  A AYF+VL A D L + +A+K A+ RQL+QT QRF VGL AITDV +A+
Sbjct: 121 QTDQQTLILNTANAYFKVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVGLVAITDVQNAR 180

Query: 179 AQFDGVLADEVLAENSLTNSYEALREITGQEYSKLAVLDTKRFAASRTTESSEALIEKAQ 238
           AQ+D VLA+EV A N+L N+ E LR++TG  Y +LA L+ + F   +  ++  AL+++A+
Sbjct: 181 AQYDTVLANEVTARNNLDNAVEELRQVTGNYYPELASLNVEHFKTDKP-KAVNALLKEAE 239

Query: 239 QQNLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDNAKNTSGEEYNDF-- 296
            +NLSLL AR+SQD+AR+ I  A  GHLP+L L       + S   +K T+  +Y+D   
Sbjct: 240 NRNLSLLQARLSQDLAREQIRQAQDGHLPTLNLTASTGISDTSYSGSK-TNSTQYDDSNM 298

Query: 297 ---KIGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDVRAYNNNINASIG 353
              KIG+N  +PLY GG   S  KQA++ +V AS+ LE+A+RSVV+ VR+  NNINASI 
Sbjct: 299 GQNKIGLNFSLPLYQGGMVNSQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNINASIS 358

Query: 354 ALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNLSNARYDYILSVLQ 413
           ++ AY+QAV+SA+S+L+A EAG+ VGTRTIVDVLDAT  LYDA + L+NARY Y+++ L 
Sbjct: 359 SINAYKQAVVSAQSSLDAMEAGYSVGTRTIVDVLDATTTLYDAKQQLANARYTYLINQLN 418

Query: 414 LRQAIGTLSEQDVMDVNAGL 433
           ++ A+GTL+EQD++ +N+ L
Sbjct: 419 IKYALGTLNEQDLLALNSTL 438