Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 493 a.a., outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) from Escherichia coli BW25113

 Score =  378 bits (970), Expect = e-109
 Identities = 207/442 (46%), Positives = 293/442 (66%), Gaps = 10/442 (2%)

Query: 1   MKKLLPLFVSAALGTLSSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSAL 60
           MKKLLP+ +  +L   SS   AENL ++Y QA+ ++P+L   AA RDAAFE +  +RS L
Sbjct: 1   MKKLLPILIGLSLSGFSSLSQAENLMQVYQQARLSNPELRKSAADRDAAFEKINEARSPL 60

Query: 61  LPQINLTAGYNINRS--DQAPRESDLLSAGINFSQELYQRSSWVSLDTAEKKARQADSQY 118
           LPQ+ L A Y  +    D     S+  SA +  +Q ++  S W +L   EK A   D  Y
Sbjct: 61  LPQLGLGADYTYSNGYRDANGINSNATSASLQLTQSIFDMSKWRALTLQEKAAGIQDVTY 120

Query: 119 AATQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQ 178
              QQ LIL  A AYF VL A D L + +A+K A+ RQL+QT QRF VGL AITDV +A+
Sbjct: 121 QTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVGLVAITDVQNAR 180

Query: 179 AQFDGVLADEVLAENSLTNSYEALREITGQEYSKLAVLDTKRFAASRTTESSEALIEKAQ 238
           AQ+D VLA+EV A N+L N+ E LR+ITG  Y +LA L+ + F   +  +   AL+++A+
Sbjct: 181 AQYDTVLANEVTARNNLDNAVEQLRQITGNYYPELAALNVENFKTDKP-QPVNALLKEAE 239

Query: 239 QQNLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDNAKN--TSGEEYNDF 296
           ++NLSLL AR+SQD+AR+ I  A  GHLP+L L       + S   +K    +G +Y+D 
Sbjct: 240 KRNLSLLQARLSQDLAREQIRQAQDGHLPTLDLTASTGISDTSYSGSKTRGAAGTQYDDS 299

Query: 297 -----KIGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDVRAYNNNINAS 351
                K+G++  +P+Y GG   S  KQA++ +V AS+ LE+A+RSVV+ VR+  NNINAS
Sbjct: 300 NMGQNKVGLSFSLPIYQGGMVNSQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNINAS 359

Query: 352 IGALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNLSNARYDYILSV 411
           I ++ AY+QAV+SA+S+L+A EAG+ VGTRTIVDVLDAT  LY+A + L+NARY+Y+++ 
Sbjct: 360 ISSINAYKQAVVSAQSSLDAMEAGYSVGTRTIVDVLDATTTLYNAKQELANARYNYLINQ 419

Query: 412 LQLRQAIGTLSEQDVMDVNAGL 433
           L ++ A+GTL+EQD++ +N  L
Sbjct: 420 LNIKSALGTLNEQDLLALNNAL 441