Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., outer membrane channel protein TolC from Erwinia tracheiphila SCR3

 Score =  376 bits (966), Expect = e-109
 Identities = 202/440 (45%), Positives = 290/440 (65%), Gaps = 8/440 (1%)

Query: 1   MKKLLPLFVSAALGTLSSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSAL 60
           MKKLLPL +  +LG LS+A  AENL +IY QA+ ++P L S AA RDAAFE +  +RS L
Sbjct: 1   MKKLLPLLIGLSLGGLSAASQAENLLQIYQQARLSNPDLRSSAADRDAAFEKINEARSPL 60

Query: 61  LPQINLTAGYNINRS--DQAPRESDLLSAGINFSQELYQRSSWVSLDTAEKKARQADSQY 118
           LPQ+ L A Y  N    D     S+  S  +  +Q ++  S W +L   EK A   D  Y
Sbjct: 61  LPQLGLGADYTYNNGYRDSGGLHSNTTSGSLQLTQTIFDMSKWRTLTLQEKIASIQDVTY 120

Query: 119 AATQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQ 178
              QQ LIL  A AYF VL A D L +  A+K ++ RQL+QT QRF VGL AITDV +A+
Sbjct: 121 QTAQQTLILNTATAYFNVLNAIDTLSYTEAQKQSIYRQLDQTAQRFNVGLVAITDVQNAR 180

Query: 179 AQFDGVLADEVLAENSLTNSYEALREITGQEYSKLAVLDTKRFAASRTTESSEALIEKAQ 238
           +Q+D VLA EV A N+L N+ E LR++ G  Y  LA L+   F   +  +   AL+++A+
Sbjct: 181 SQYDSVLASEVTARNNLDNNLETLRQVAGNYYLTLASLNVDSFKTEKP-QPVNALLKEAE 239

Query: 239 QQNLSLLAARISQDVARDNISLASSGHLPSLTLDGGYN-----YGNNSNDNAKNTSGEEY 293
            +NLSLL+AR++QD+AR+ I  A +GH+P+L L          YG    + + +++    
Sbjct: 240 SRNLSLLSARLNQDLAREQIRSAETGHMPTLDLTASTGLSNSKYGGRRANQSSSSTDSIA 299

Query: 294 NDFKIGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDVRAYNNNINASIG 353
              ++G++  +PLY GG  TS  KQA++AYVAAS+ LE+A+R+ V+ VR+  NN+NAS+ 
Sbjct: 300 GSNQVGLSFSLPLYAGGAVTSQVKQAQYAYVAASEQLESAHRAAVQTVRSSFNNVNASVS 359

Query: 354 ALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNLSNARYDYILSVLQ 413
           ++ AY+QAV+SA+S+L+A EAG+ VGTRTIVDVLDAT  LY+A + L++ARY Y+++ L 
Sbjct: 360 SINAYKQAVVSAQSSLDAMEAGYQVGTRTIVDVLDATSTLYNAKQQLADARYSYMINELN 419

Query: 414 LRQAIGTLSEQDVMDVNAGL 433
           ++ A+GTL+EQD++ +N+ L
Sbjct: 420 IKSALGTLNEQDLLALNSRL 439