Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., outer membrane channel protein TolC from Dickeya dianthicola ME23

 Score =  387 bits (993), Expect = e-112
 Identities = 207/439 (47%), Positives = 301/439 (68%), Gaps = 7/439 (1%)

Query: 1   MKKLLPLFVSAALGTLSSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSAL 60
           MKKLLPL +S  LG  S+A  AE+L ++Y QAK  +P L S AA RDAAFE +  +RS+L
Sbjct: 1   MKKLLPLLISLGLGGFSAASQAEDLLQVYQQAKTTNPDLRSAAANRDAAFEKINEARSSL 60

Query: 61  LPQINLTAGYNINRS--DQAPRESDLLSAGINFSQELYQRSSWVSLDTAEKKARQADSQY 118
           LPQ+ L A Y  N    D+    +++ SA +  +Q ++  S W +L   EK+A   D  Y
Sbjct: 61  LPQLGLGADYTYNNGYRDRKDVNNNVTSASLQLTQSIFNMSLWRALTLQEKQAGIQDVSY 120

Query: 119 AATQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQ 178
             +QQ L+L  + AYF VLRA D L +V A+K ++ R+L+QT QRF VGL AITDV +A+
Sbjct: 121 QTSQQTLLLNTSTAYFNVLRAIDALSYVSAQKQSIYRELDQTTQRFNVGLVAITDVQNAR 180

Query: 179 AQFDGVLADEVLAENSLTNSYEALREITGQEYSKLAVLDTKRFAASRTTESSEALIEKAQ 238
           +Q+D VLA EV A N+L N+ E LR++TG  Y +LA L+  RF+  +  ++   L+++A+
Sbjct: 181 SQYDSVLASEVTARNNLDNAMEILRQVTGNFYPQLAGLNIDRFSPQKP-DAVNGLLKEAE 239

Query: 239 QQNLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDNAK----NTSGEEYN 294
            +NLSLL+AR+SQD+AR+ I  A SGHLP+L L       N +   ++    N S     
Sbjct: 240 NRNLSLLSARLSQDLAREQIRSAESGHLPTLNLTASTGVTNTNYSGSRVADSNLSDTYVG 299

Query: 295 DFKIGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDVRAYNNNINASIGA 354
             +IG++  +P+Y+GG T+S  KQA+ ++VA+S+ +E+A+RSV++ +R+ +NNI+ASI +
Sbjct: 300 QNQIGLSFSLPIYSGGGTSSRVKQAQHSFVASSESMESAHRSVIQTLRSAHNNISASISS 359

Query: 355 LRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNLSNARYDYILSVLQL 414
           + AY+QAVISA+S+L+A EAG+ VGTRTIVDVLDAT  LY+A + LS ARYDY+++ L L
Sbjct: 360 VNAYKQAVISAQSSLDAMEAGYQVGTRTIVDVLDATTTLYNAKQQLSGARYDYLINQLNL 419

Query: 415 RQAIGTLSEQDVMDVNAGL 433
           +QA+GTL+E D+  +NA L
Sbjct: 420 KQALGTLNEDDLRTLNAML 438