Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 467 a.a., TolC family outer membrane protein from Dickeya dadantii 3937

 Score =  155 bits (392), Expect = 3e-42
 Identities = 116/445 (26%), Positives = 204/445 (45%), Gaps = 20/445 (4%)

Query: 7   LFVSAALGTLSSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALLPQINL 66
           + ++  L     +  A  L + +  A  ND QL +   +RDA  E V   R+ LLP +  
Sbjct: 6   VLLTVVLSLSCGSAQAMGLLDAWELALRNDAQLRAAGFERDAGQEEVAIGRAGLLPSLQY 65

Query: 67  TAGYNINRS----------DQAPRESDLLSAGINFSQELYQRSSWVSLDTAEKKARQADS 116
           T G N + S          +   R+ D   + +   Q L   ++W        +   AD 
Sbjct: 66  TYGANYSHSKVTQRDRTLNNTTKRDYDNYVSTLTLRQPLLDYAAWARYQQGVTRKLMADQ 125

Query: 117 QYAATQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHD 176
           ++    Q L++R+ +++ E L AQ+ L  + A++ A   QL   ++    G    TD+ +
Sbjct: 126 RFRDRSQDLMVRLYQSWSEALLAQEKLMLLDAQRRAYQEQLALNRRLLAAGEGTQTDLRE 185

Query: 177 AQAQFDGVLADEVLAENSLTNSYEALREITG-----QEYSKLAVLDTKRFAASRTTESSE 231
            +A++    A  +  E++L  +   L  + G     Q+ S LA LDT     +     S+
Sbjct: 186 TEARYTVTEAQRIEQEDTLDAAMTDLENMMGSPLQIQDLSPLA-LDTLPDNVTENRSLSQ 244

Query: 232 ALIEKAQQQNLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDNAKNTSGE 291
              E   + N  L   R + D +R  I    +GHLP+L L        NS   ++    +
Sbjct: 245 WR-ELTVRHNAKLAVQRENVDYSRYEIERNRAGHLPTLDLVASTR---NSLSESEYNYNQ 300

Query: 292 EYNDFKIGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDVRAYNNNINAS 351
           +Y+   +G+ ++VPLY+GG  ++  +QA   Y  +  +L+   R    ++R   N     
Sbjct: 301 KYDTQTVGLQVRVPLYSGGAVSASMRQAAAEYQQSQAELDNQTRQTFAELRRQFNLCANG 360

Query: 352 IGALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNLSNARYDYILSV 411
              +RA++ +V +A+ A+ AT      G R  +DVL A +  Y+A + L+  +Y ++ + 
Sbjct: 361 AAKIRAWQMSVAAAEEAIRATRQSVAGGERINLDVLMAEQEWYNARRELTEVKYRWLQAW 420

Query: 412 LQLRQAIGTLSEQDVMDVNAGLKVA 436
           L LR   GTL+EQD+M + A  + A
Sbjct: 421 LNLRYTAGTLNEQDMMQLAAWFQSA 445