Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., outer membrane channel protein TolC from Dickeya dadantii 3937

 Score =  388 bits (997), Expect = e-112
 Identities = 208/440 (47%), Positives = 303/440 (68%), Gaps = 9/440 (2%)

Query: 1   MKKLLPLFVSAALGTLSSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSAL 60
           MKKLLPL +S  LG  S+   AE+L ++Y QAK  +P L S AA RDAAFE +  +RS+L
Sbjct: 1   MKKLLPLLISLGLGGFSAVSQAEDLLQVYQQAKTTNPDLRSAAANRDAAFEKINEARSSL 60

Query: 61  LPQINLTAGYNINRS--DQAPRESDLLSAGINFSQELYQRSSWVSLDTAEKKARQADSQY 118
           LPQ+ L A Y       D+    S+  SA +  +Q ++  S W +L   EK+A   D  Y
Sbjct: 61  LPQLGLGADYTYTSGYRDRRDINSNATSASLQLTQSIFNMSLWRALTLQEKQAGIQDVSY 120

Query: 119 AATQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQ 178
             +QQ L+L  A AYF VLRA D+L +V A+K ++ R+L+QT QRF VGL AITDV +A+
Sbjct: 121 QTSQQTLLLNTATAYFNVLRAIDSLSYVSAQKQSIYRELDQTTQRFNVGLVAITDVQNAR 180

Query: 179 AQFDGVLADEVLAENSLTNSYEALREITGQEYSKLAVLDTKRFAASRTTESSEALIEKAQ 238
           AQ+D VLA EV A N+L N+ E LR++TGQ Y +LA L+  RF+  +  ++   L+++A+
Sbjct: 181 AQYDSVLASEVTARNNLDNAMETLRQVTGQFYPQLAGLNIDRFSPQKP-DAVNGLLKEAE 239

Query: 239 QQNLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDNAKNTSGEEYNDF-- 296
            +NLSLL+AR+SQD+AR+ I  A SGHLP+L L        N++ +     G+ +N+   
Sbjct: 240 NRNLSLLSARLSQDLAREQIRSAESGHLPTLNLTASTGV-TNTDYSGSRAVGDNFNNTYV 298

Query: 297 ---KIGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDVRAYNNNINASIG 353
              ++G++  +P+Y+GG T+S  KQA+ ++VA+S+ +E+A+RSV++ +R+ +NNI+ASI 
Sbjct: 299 GQNQVGLSFSLPIYSGGGTSSRVKQAQHSFVASSESMESAHRSVIQTLRSAHNNISASIS 358

Query: 354 ALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNLSNARYDYILSVLQ 413
           ++ AY+QAVISA+S+L+A EAG+ VGTRTIVDVLDAT  LY+A + LS ARYDY+++ L 
Sbjct: 359 SVNAYKQAVISAQSSLDAMEAGYQVGTRTIVDVLDATTTLYNAKQQLSGARYDYLINQLN 418

Query: 414 LRQAIGTLSEQDVMDVNAGL 433
           L+QA+GTL+E D+  +NA L
Sbjct: 419 LKQALGTLNEDDLRTLNAML 438