Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 810 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Rhodanobacter sp000427505 FW510-R12

 Score =  362 bits (930), Expect = e-104
 Identities = 221/549 (40%), Positives = 311/549 (56%), Gaps = 15/549 (2%)

Query: 5   YNAGAIEVLNGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGYASKIQVILH 60
           Y++  I+VL GLE VR+RPGMY     D T  +H+  EV+DNS+DEALAGY  K+ V + 
Sbjct: 10  YDSSNIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCDKVAVTIL 69

Query: 61  ADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVN 120
            D S+ V D+GRG+PVD+HPEE  S  E+++  LHAGGKF   +Y+ SGGLHGVG+SVVN
Sbjct: 70  DDGSVSVSDNGRGIPVDMHPEEHRSTAEVVMTVLHAGGKFDANSYKVSGGLHGVGVSVVN 129

Query: 121 ALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSP-NF 179
           ALS  + + + RDG  Y+  +  G+ +  L   G   +R  GT+V F P    F S  +F
Sbjct: 130 ALSDHLWLTIYRDGHEYQQEYALGEPLYPLKEVGPSNKR--GTTVRFLPSPATFTSNIDF 187

Query: 180 SVSRLINNLRAKAVLCPGLEIIFTD-KVNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPF 238
               L   LR  A L  G+ I   D +       + YE G++ ++    +  T L     
Sbjct: 188 HYEILAKRLRELAFLNSGVTIELKDERGEGRADTFAYEGGIRSFVQHLAQMKTALHPNVI 247

Query: 239 TGEFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFR 298
           +            A+ W     E++   + N IP   GGTH+ G R  L  +++ + E  
Sbjct: 248 SLSAEQDGIVVEVAMQWTDSYNEIMF-CFTNNIPQRDGGTHLTGFRAALTRSLQNYIEKE 306

Query: 299 NLLPRG-VKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLW 357
            L     V L+G+D+ +    VLS+K+ DP+F+ QTK++L S +    V  V+ +    +
Sbjct: 307 GLAKNAKVALSGDDMREGMIAVLSVKVPDPKFSSQTKDKLVSSEVKTVVEQVINEKLGEF 366

Query: 358 LNEKPQLAEQLAE--VCIANAHSRMRASKKVVRKKIASGPA-LPGKLTDCTVQDLNRTEL 414
           L E P  A+ +A   V  A A    R ++++ R+K A   A LPGKL DC  +D    EL
Sbjct: 367 LLEHPNEAKAIASKVVDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALCEL 426

Query: 415 FLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVAL--GIDP 472
           FLVEGDSAGGSAKQ R+R  QAV+PL+GKILN  +   D++LAS EV  +  AL  GI  
Sbjct: 427 FLVEGDSAGGSAKQGRNRRTQAVLPLKGKILNVEKARFDRMLASAEVGTLITALGTGIGK 486

Query: 473 DSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCG 532
           D  N + LRY ++ ++ DAD DG HI TLL   F R    L++ GH+Y+ +PPLY++  G
Sbjct: 487 DEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIGLPPLYKVKQG 546

Query: 533 KEVFYALDD 541
           K+  Y  DD
Sbjct: 547 KQELYIKDD 555



 Score = 69.7 bits (169), Expect = 5e-16
 Identities = 34/70 (48%), Positives = 52/70 (74%), Gaps = 1/70 (1%)

Query: 551 LSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRA 610
           L + K   ++QRFKGLGEMNP QL +TT++P+TRR++Q+ I+DA A D+M  ML+G +  
Sbjct: 733 LDEAKKGRSIQRFKGLGEMNPEQLWDTTVNPDTRRMLQVGIEDAIAADQMFSMLMG-EAV 791

Query: 611 DDRRAWLQRN 620
           + RR +++ N
Sbjct: 792 EPRRDFIEAN 801