Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 808 a.a., DNA gyrase subunit B from Xanthobacter sp. DMC5

 Score =  374 bits (961), Expect = e-108
 Identities = 223/570 (39%), Positives = 318/570 (55%), Gaps = 13/570 (2%)

Query: 3   EQYNAGAIEVLNGLEPVRRRPGMYTDTTRP----NHLGQEVIDNSVDEALAGYASKIQVI 58
           + Y A +I+VL GL+ VR+RPGMY   T      +H+  EV+DN++DEALAG+A ++ V 
Sbjct: 11  DDYGAQSIQVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGWAKEVTVT 70

Query: 59  LHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISV 118
           L A+ S+ V DDGRG+P D+HPEE VS  E+I+ +LHAGGKF+  +Y+ SGGLHGVG+SV
Sbjct: 71  LEANGSVTVTDDGRGIPTDLHPEEGVSAAEVIMTQLHAGGKFNQNSYKVSGGLHGVGVSV 130

Query: 119 VNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPN 178
           VNALS  +++ + RDG+ + + F HGD    L V GT      GT V F P  + F    
Sbjct: 131 VNALSTTLDLTIWRDGKEHYMRFRHGDAEAPLKVVGTAPAGKRGTKVTFLPSPETFTRIE 190

Query: 179 FSVSRLINNLRAKAVLCPGLEIIFTDKVNNNEHR--WLYEDGLKDYLAEGVKGYTLLPEE 236
           F  + L + LR  A L  G+ I+ TD       R    YE G++ ++    +  T L  +
Sbjct: 191 FDYATLEHRLRELAFLNSGVLIVLTDARGPEPKREELHYEGGVEAFVKYLDRNKTALIAK 250

Query: 237 PFTGEFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCE 296
           P              A+ W  +G       + N IP    GTH  G    L   +  +  
Sbjct: 251 PVVIRAEKDGITVEAALSW-NDGYHENVLCFTNNIPQRDRGTHFTGFAAALTRQVLGYAN 309

Query: 297 FRNLLPR-GVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFS 355
              +  +  V  TGED  +    VLS+K+ DP+F+ QTK++L S +    V  +V +A +
Sbjct: 310 TSGISKKEKVDPTGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENLVGEALA 369

Query: 356 LWLNEKPQLAEQLAEVCIANAHSRMRASKK---VVRKKIASGPALPGKLTDCTVQDLNRT 412
            W  E P  A+ +    +  A +R  A K      RK      +LPGKL DC  +D  ++
Sbjct: 370 NWFEENPVEAKNVIGKVVEAAAAREAARKARDLTRRKSPLDVASLPGKLADCQEKDPAKS 429

Query: 413 ELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVAL--GI 470
           E+F+VEGDSAGGSAKQ RDR FQAV+PLRGKILN      D++L+S+++  +  AL  GI
Sbjct: 430 EIFIVEGDSAGGSAKQGRDRAFQAVLPLRGKILNVERARFDKMLSSEQIGTLITALGTGI 489

Query: 471 DPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRID 530
             D  ++  LRY K+ I+ DAD DG HI TLL   F R    +V AGH+++A PPLY++ 
Sbjct: 490 GRDDFDIAKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPEIVDAGHLFIAQPPLYKVA 549

Query: 531 CGKEVFYALDDQEKEGVLERLSQKKAKVNV 560
            GK   Y  D++  E  L     ++A +++
Sbjct: 550 RGKSETYLKDEKALEDYLITTGLEEASLHL 579



 Score = 62.4 bits (150), Expect = 7e-14
 Identities = 44/140 (31%), Positives = 71/140 (50%), Gaps = 19/140 (13%)

Query: 505 LFTRHFRALVKAG---HVYVAMPPLYRIDCGKE----VFYAL-------DDQEKEGVLER 550
           +F+R  R + +     H ++A P   R+D        VF A        D+Q   G ++ 
Sbjct: 668 VFSRTVRGVAEVARLDHAFIASPEARRLDTLARDLDGVFAAAATLKRRSDEQVLFGAVDL 727

Query: 551 LS----QKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDMLLG 606
                   +  +++QR+KGLGEMNP QL ETT+D N R L+Q+ + + +A D++   L+G
Sbjct: 728 FDAVTDSGRKGLSLQRYKGLGEMNPEQLWETTLDINARSLLQVRVKEVDAADDLFSRLMG 787

Query: 607 KKRADDRRAWLQRNGDMAEV 626
               + RR ++Q N   A V
Sbjct: 788 -DTVEPRREFIQENALRASV 806