Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 694 a.a., DNA gyrase subunit B from Xanthobacter sp. DMC5

 Score =  480 bits (1236), Expect = e-140
 Identities = 286/628 (45%), Positives = 390/628 (62%), Gaps = 22/628 (3%)

Query: 1   MTEQYNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYASKIQV 57
           M   Y A  IEVL GLEPVRRRPGMY   TD+   +HL  EV+DNS+DEA+AG+A+ I+V
Sbjct: 47  MAGDYTAAHIEVLEGLEPVRRRPGMYIGGTDSKALHHLFAEVVDNSMDEAVAGHATFIEV 106

Query: 58  ILHADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGI 116
            L AD  L V D+GRG+PV+ HP+    S +E+I+  LHAGGKF +K Y+ SGGLHGVG+
Sbjct: 107 QLGADGYLTVSDNGRGIPVEEHPKFPGKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGV 166

Query: 117 SVVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYF-D 175
           SVVNALS  +EV V R+  +Y  +F  G     L   G    R  GT V F PD + F +
Sbjct: 167 SVVNALSDDLEVEVARNQTLYRQSFSKGVPQGPLKEVGRITNRR-GTRVRFHPDPEIFGE 225

Query: 176 SPNFSVSRLINNLRAKAVLCPGLEIIFTD-----KVNNN---EHRWLYEDGLKDYLAEGV 227
             +F  +R+    R+KA L  G+EI ++      K   N   +  + +  GLKDYLA  +
Sbjct: 226 GAHFEPARVFRMARSKAYLFGGVEIRWSCDPELLKAGENIPEKTVFRFPGGLKDYLAADL 285

Query: 228 KGYTLLPEEPFTGEF--TAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQ 285
           +G TL+  + F G    T    +  WAV W+ +    I+ SY N IPT  GGTH NGLR 
Sbjct: 286 EGNTLVHPDIFAGRIQKTGGHGSVEWAVAWVADADGSIS-SYCNTIPTPDGGTHENGLRT 344

Query: 286 GLLDAMREFCEFRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAF 345
            LL  +++  E      RG  +TG+DV   CA +LS+ +++P+F GQTK+RL++ ++A  
Sbjct: 345 VLLKGLKDHAERSGQGKRGAIITGDDVITGCAAMLSVFVREPEFQGQTKDRLATAEAARI 404

Query: 346 VSGVVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRAS--KKVVRKKIASGPALPGKLTD 403
           V   ++D F  WL   P  A +L +  I  A  R+R    K+V RK       LPGKL D
Sbjct: 405 VEQALRDPFDHWLAANPVQASRLLDHVIDRAEERLRRKQEKEVSRKTAVRKLRLPGKLAD 464

Query: 404 CTVQDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHD 463
           C+  +   +E+F+VEGDSAGGSAKQARDR+ QAV+PLRGKILN    + D++ A+Q++ D
Sbjct: 465 CSNTEAAGSEIFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVANATRDKLAANQQLAD 524

Query: 464 ISVALGIDPDSDNLEA-LRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVA 522
           +  ALG    +   EA LRY KV I+ DAD DG HIA+LL   F R    L++ GH+++A
Sbjct: 525 LGQALGCGTLAHYREADLRYEKVIIMTDADVDGAHIASLLVTYFFRQMPKLIEEGHLFLA 584

Query: 523 MPPLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRETTMDPN 582
           +PPLYRI  G +  YA DD  +E +L++    K KV+V RFKGLGEM P QL+ETTMDP 
Sbjct: 585 VPPLYRITQGAKTLYARDDAHRERLLKKEFSAKGKVDVGRFKGLGEMMPAQLKETTMDPK 644

Query: 583 TRRLVQLTIDDAE--ATDEMMDMLLGKK 608
           TR L +++++DAE  AT ++++ L+G K
Sbjct: 645 TRTLQRVSVEDAERAATVDLVERLMGNK 672