Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 805 a.a., DNA gyrase subunit B from Pseudomonas simiae WCS417

 Score =  373 bits (957), Expect = e-107
 Identities = 221/569 (38%), Positives = 329/569 (57%), Gaps = 19/569 (3%)

Query: 5   YNAGAIEVLNGLEPVRRRPGMYTDTTRP----NHLGQEVIDNSVDEALAGYASKIQVILH 60
           Y++ +I+VL GL+ VR+RPGMY   T      +H+  EV+DNS+DEALAG+   I +I+H
Sbjct: 7   YDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISIIIH 66

Query: 61  ADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVN 120
            D+S+ V D+GRG+PVD+H EE VS  E+I+  LHAGGKF + +Y+ SGGLHGVG+SVVN
Sbjct: 67  PDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 126

Query: 121 ALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFS 180
           ALS+ + + VRR G+++E  + HG     + + G      TGT +HF P  + F + +FS
Sbjct: 127 ALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVG--DSETTGTQIHFKPSAETFKNIHFS 184

Query: 181 VSRLINNLRAKAVLCPGLEIIFTDKVNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPFTG 240
              L   +R  + L  G+ I+  D+ +  E  + YE GL+ ++       T + +     
Sbjct: 185 WDILAKRIRELSFLNSGVGIVLKDERSGKEELFKYEGGLRAFVEYLNTNKTAVNQ---VF 241

Query: 241 EFTAQTE---AATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEF 297
            F  Q E       A+ W     E +   + N IP   GGTH+ G R  L   +  + E 
Sbjct: 242 HFNIQREDGIGVEIALQWNDSFNENLL-CFTNNIPQRDGGTHLVGFRSALTRNLNTYIEA 300

Query: 298 RNLLPR-GVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSL 356
             L  +  V  TG+D  +    ++S+K+ DP+F+ QTK++L S +    V   +   FS 
Sbjct: 301 EGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSD 360

Query: 357 WLNEKPQLAEQLAEVCI--ANAHSRMRASKKVVRKKIASGPA-LPGKLTDCTVQDLNRTE 413
           +L E P  A+ +    I  A A    R ++++ R+K A   A LPGKL DC  +D   +E
Sbjct: 361 FLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSE 420

Query: 414 LFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVAL--GID 471
           L+LVEGDSAGGSAKQ R+R  QA++PL+GKILN  +   D++++SQEV  +  AL  GI 
Sbjct: 421 LYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIG 480

Query: 472 PDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDC 531
            D  N++ LRY  + I+ DAD DG HI TLL   F R    L++ G++Y+A PPLY++  
Sbjct: 481 RDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKK 540

Query: 532 GKEVFYALDDQEKEGVLERLSQKKAKVNV 560
           GK+  Y  DD   E  + + + + A +++
Sbjct: 541 GKQEQYIKDDDAMEEYMTQSALEDASLHL 569



 Score = 64.3 bits (155), Expect = 2e-14
 Identities = 32/77 (41%), Positives = 52/77 (67%), Gaps = 1/77 (1%)

Query: 544 KEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDM 603
           KE +   +++   +  +QR+KGLGEMNP QL ETTMDP  RR++++TI+DA   D++ + 
Sbjct: 721 KEALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIGADQIFNT 780

Query: 604 LLGKKRADDRRAWLQRN 620
           L+G    + RR +++ N
Sbjct: 781 LMG-DAVEPRRDFIESN 796