Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 869 a.a., DNA gyrase subunit B (EC 5.99.1.3) from Variovorax sp. SCN45

 Score =  362 bits (929), Expect = e-104
 Identities = 228/601 (37%), Positives = 328/601 (54%), Gaps = 50/601 (8%)

Query: 5   YNAGAIEVLNGLEPVRRRPGMY----TDTTRPNHLGQEVIDNSVDEALAGYASKIQVILH 60
           Y  G+I +L GLE VR+RPGMY    +D T  +HL  EV+DNS+DEALAG+   I V +H
Sbjct: 31  YGEGSITILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIH 90

Query: 61  ADQSLEVIDDGRGMP----VDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGI 116
           +D S+ V D+GRG+P    +D   E K S  E+ L +LHAGGKF+  +Y+ SGGLHGVG+
Sbjct: 91  SDNSISVTDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGV 150

Query: 117 SVVNALSKRVEVAVRRDGQVYEIAFEHGD------------KVTELTVTGTCGRRNTGTS 164
           S VNALS  + + VRR+G+++E+ F  G             +V+ + + G   +R  GT 
Sbjct: 151 SCVNALSVMLRLVVRREGKIHELEFSRGFVQNRLLETVSGVEVSPMKIIGDTDKR--GTE 208

Query: 165 VHFWPDTKYFDSPN-FSVSRLINNLRAKAVLCPGLEIIFTDKVNNNEHRWLYEDGLKDYL 223
           VHF PDT+ F   N F    L   LR  + L  G+ I   D+    E  +    G++ ++
Sbjct: 209 VHFLPDTQIFKENNDFHYEILSKRLRELSFLNNGVRIRLKDERTGKEDDFSGAGGVRGFV 268

Query: 224 AEGVKGYTLLPEEPF--TGEFTAQTEAAT--------WAVIWLPEGGELITESYVNLIPT 273
               KG T+L    F   GE  A T             A+ W     E +   + N IP 
Sbjct: 269 EFINKGKTVLHPNSFYAEGERPADTYGGIPGTHIGVEVAMQWNSGYNEQVL-CFTNNIPQ 327

Query: 274 AQGGTHVNGLRQGLLDAMREFCEFRNLLPRG-VKLTGEDVFDRCAYVLSIKMQDPQFAGQ 332
             GGTH+ GLR  +   + ++ E      +  V++TG+D+ +    VLS+K+ +P+F+ Q
Sbjct: 328 RDGGTHLTGLRAAMTRVINKYIEENEFAKKAKVEVTGDDMREGLCCVLSVKVPEPKFSSQ 387

Query: 333 TKERLSSRQSAAFVSGVVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRASKK---VVRK 389
           TK++L S +  A V  +V    + +L E+P  A+ +    +  A +R  A K      RK
Sbjct: 388 TKDKLVSSEVRAPVEDIVGKLLTDYLQERPNDAKIICGKIVEAARAREAARKAREMTRRK 447

Query: 390 KIASGPALPGKLTDCTVQDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWE 449
            +  G  LPGKL DC  +D    E++LVEGDSAGGSAKQ RDR+FQA++PLRGKILN  +
Sbjct: 448 GVLDGMGLPGKLADCQEKDPALCEVYLVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEK 507

Query: 450 VSADQVLASQEVHDISVALGI------------DPDSDNLEALRYGKVCILADADSDGLH 497
              +++L S E+  +  ALG               D  N+  LRY ++ I+ DAD DG H
Sbjct: 508 ARYEKLLTSNEILTMITALGTGIGRAGATTAGGGADDFNVAKLRYHRIIIMTDADVDGAH 567

Query: 498 IATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEVFYALDDQEKEGVLERLSQKKAK 557
           I TLL   F R    LV+ GH+Y+A PPLY++  GKE  Y  D    +  L +++ K A+
Sbjct: 568 IRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKVGKEEQYLKDGPALDAFLLKVALKDAR 627

Query: 558 V 558
           +
Sbjct: 628 I 628



 Score = 67.4 bits (163), Expect = 3e-15
 Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 1/80 (1%)

Query: 541 DQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEM 600
           D  ++ +   +S+ +   + QR+KGLGEMNP QL ETTMDP  RRL+++ IDDA   D +
Sbjct: 782 DDFRQAMKWLISEAERATSRQRYKGLGEMNPEQLWETTMDPTVRRLLRVQIDDAIEADRV 841

Query: 601 MDMLLGKKRADDRRAWLQRN 620
             ML+G +  + RR ++++N
Sbjct: 842 FTMLMGDE-VEPRREFIEQN 860