Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 665 a.a., DNA topoisomerase IV subunit B (EC 5.99.1.3) from Variovorax sp. SCN45

 Score =  604 bits (1558), Expect = e-177
 Identities = 320/647 (49%), Positives = 430/647 (66%), Gaps = 26/647 (4%)

Query: 5   YNAGAIEVLNGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGYASKIQVILHADQS 64
           Y+ G+I VL GLEPV++RPGMYT T  P H+ QEVIDN+ DEALAG+  KI+V LHAD S
Sbjct: 18  YSEGSIRVLKGLEPVKQRPGMYTRTDNPLHIIQEVIDNAADEALAGHGKKIKVTLHADGS 77

Query: 65  LEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKF---SNKNYQFSGGLHGVGISVVNA 121
           + + DDGRG+P  +HPEEK   VEL+  +LHAGGKF   S   Y FSGGLHGVG+SV NA
Sbjct: 78  VSIEDDGRGIPFGLHPEEKAPVVELVYTRLHAGGKFDKGSGGAYSFSGGLHGVGVSVTNA 137

Query: 122 LSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGT-CGRRNTGTSVHFWPDTKYFDSPNFS 180
           LSKR+EV+  R+G + ++AF  GD + +L V     G R  GT+V  WPD KYF++    
Sbjct: 138 LSKRLEVSTHREGSIAKLAFSGGDVIEQLEVRKLEAGERKQGTTVRAWPDAKYFETAALP 197

Query: 181 VSRLINNLRAKAVLCPGLEIIFTDKVNNNEHRWLYEDGLKDYLAEGVKGYTLLP------ 234
           +  L + LR+KAVL PG+ +  T++      +WLY+ GL DYL + + G  ++P      
Sbjct: 198 MGELTHLLRSKAVLMPGVSVTLTNEKTKESQQWLYKGGLSDYLMQTLNGDPVIPLFEGGG 257

Query: 235 EEPFTGEFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREF 294
                 +  A+ E A W V +  E G+ + ESYVNLIPT+ GGTH +GLR GL  A++ F
Sbjct: 258 HADKNADNFAEGEGADWCVAFT-EDGQPVRESYVNLIPTSAGGTHESGLRDGLFTAVKGF 316

Query: 295 CEFRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAF 354
            E  +LLP+GVKL  EDVF R +YVLS K+ DPQF GQ KERL+SR +   VS  V+ A 
Sbjct: 317 IELHSLLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQIKERLNSRDAVRLVSSFVRPAL 376

Query: 355 SLWLNEKPQLAEQLAEVCIANAHSRMRASKKVVRKKIASGPALPGKLTDCTVQDLNRTEL 414
            LWLN+     ++LAE+ I  A +R RA +KV ++K +    LPGKLTDC  +D++  E+
Sbjct: 377 ELWLNQHVDYGKKLAELAIKAAQTRQRAGQKVEKRKGSGVAVLPGKLTDCESKDISHNEV 436

Query: 415 FLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALGIDP-- 472
           FLVEGDSAGGSAK  RD+E QA++PLRGK+LNTWEV  D++ A+ E+HDISVA+G+DP  
Sbjct: 437 FLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEVERDRLFANTEIHDISVAVGVDPHG 496

Query: 473 --DSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRID 530
             D+ ++  LRYGK+CIL+DAD DG HI  LL  LF RHF  L++AGHVYVA PPL+R+D
Sbjct: 497 PNDTPDMSGLRYGKICILSDADVDGSHIQVLLLTLFFRHFPKLIEAGHVYVAKPPLFRVD 556

Query: 531 C---GKE---VFYALDDQEKEGVLERLSQ---KKAKVNVQRFKGLGEMNPLQLRETTMDP 581
               GK+     YALD+ E    L++L +   ++   ++ RFKGLGEM+  QL ETT++P
Sbjct: 557 APARGKKPASKVYALDEGELTATLDKLRKDGVREGAWSISRFKGLGEMSAEQLWETTLNP 616

Query: 582 NTRRLVQLTID--DAEATDEMMDMLLGKKRADDRRAWLQRNGDMAEV 626
           +TRRL+Q+ +   D  +T   +  L+GK  A  RR  ++   D  ++
Sbjct: 617 DTRRLMQVQLGRFDFTSTQGEITKLMGKGEAAARRELMELRADDVDI 663