Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

 Score =  380 bits (976), Expect = e-109
 Identities = 219/571 (38%), Positives = 330/571 (57%), Gaps = 13/571 (2%)

Query: 1   MTEQYNAGAIEVLNGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGYASKIQ 56
           M+  Y++ +I+VL GL+ VR+RPGMY     D T  +H+  EV+DNS+DEALAGY   I 
Sbjct: 1   MSNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIV 60

Query: 57  VILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGI 116
           V +H D S+ V DDGRG+P ++HPEEKVS  E+I+  LHAGGKF + +Y+ SGGLHGVG+
Sbjct: 61  VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 117 SVVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDS 176
           SVVNALS++V + + R G+++   + HG     L V G   R  TGT+V FWP  + F +
Sbjct: 121 SVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETER--TGTTVRFWPSAQTFTN 178

Query: 177 PNFSVSRLINNLRAKAVLCPGLEIIFTD-KVNNNEHRWLYEDGLKDYLAEGVKGYTLLPE 235
             F    L   LR  + L  G+ I  TD +  + +  ++YE G++ ++    +  T + E
Sbjct: 179 IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHFMYEGGIQAFVTHLNRNKTPIHE 238

Query: 236 EPFTGEFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFC 295
           + F      +   +    +   +G +     + N IP   GGTH+ G R  L   +  + 
Sbjct: 239 KVFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYM 298

Query: 296 EFRNLLPRGVKLT-GEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAF 354
           +      +    T G+D  +    V+S+K+ DP+F+ QTK++L S +  + V   + +  
Sbjct: 299 DKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKL 358

Query: 355 SLWLNEKPQLAEQLAEVCI--ANAHSRMRASKKVVRKKIASGPA-LPGKLTDCTVQDLNR 411
           + +L E P  A+ +    I  A A    R ++++ R+K A   A LPGKL DC  +D   
Sbjct: 359 ADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPAL 418

Query: 412 TELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVAL--G 469
           +EL++VEGDSAGGSAKQ R+R+ QA++PL+GKILN  +   D++L+SQEV  +  AL  G
Sbjct: 419 SELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG 478

Query: 470 IDPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRI 529
           I  D  N + LRY  + I+ DAD DG HI TLL   F R    L++ G++Y+A PPLY++
Sbjct: 479 IGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKV 538

Query: 530 DCGKEVFYALDDQEKEGVLERLSQKKAKVNV 560
             GK+  Y  D++        L+   A+++V
Sbjct: 539 KKGKQEQYIKDEEAMNQYQVALAMDGAELHV 569



 Score = 73.6 bits (179), Expect = 3e-17
 Identities = 34/70 (48%), Positives = 52/70 (74%), Gaps = 1/70 (1%)

Query: 551 LSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRA 610
           + + +  +++QR+KGLGEMNP QL ETTMDP TRR++Q+TI+DA   DE+   L+G  + 
Sbjct: 728 IKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLMG-DQV 786

Query: 611 DDRRAWLQRN 620
           + RRA+++ N
Sbjct: 787 EPRRAFIETN 796