Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 838 a.a., DNA gyrase subunit B (EC 5.99.1.3) from Sphingobium sp. HT1-2

 Score =  350 bits (897), Expect = e-100
 Identities = 214/570 (37%), Positives = 316/570 (55%), Gaps = 24/570 (4%)

Query: 2   TEQYNAGAIEVLNGLEPVRRRPGMYTDTTRP----NHLGQEVIDNSVDEALAGYASKIQV 57
           + +Y A +I+VL GL+ VR+RPGMY   T      +H+  EV DN++DEALAG+  +I +
Sbjct: 14  SNEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGHCDRIVI 73

Query: 58  ILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKN----YQFSGGLHG 113
            L+ D S+ V D+GRG+P  IH EE VS  E+I+ +LHAGGKF N +    Y+ SGGLHG
Sbjct: 74  TLNPDNSVSVEDNGRGIPTGIHKEEGVSAAEVIMTQLHAGGKFENTSDDNAYKVSGGLHG 133

Query: 114 VGISVVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTK- 172
           VG+SVVNALS+ +++ + RDG+ + + F +GD    L V G       GT V F   T+ 
Sbjct: 134 VGVSVVNALSEWLDLNIWRDGKEHWMRFAYGDATAPLKVIGDAPEGKKGTRVTFLASTEK 193

Query: 173 -------YFDSPNFSVSRLINNLRAKAVLCPGLEIIFTDKVNNN--EHRWLYEDGLKDYL 223
                  + +   +   +L +  R  A L  G+ +   D  +    E    YE G+  ++
Sbjct: 194 VPGDGGTFKNQTEYDFDKLEHRYRELAFLNSGVRLFLVDARHEEKKEVELYYEGGIAAFV 253

Query: 224 AEGVKGYTLLPEEPFTGEFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGL 283
               +    L  +P     T        A+ W     E +   + N IP   GGTH+   
Sbjct: 254 KYLDRNKNALMPDPIAIAGTRDDVTIDVALEWNDSYYENVL-CFTNNIPQRDGGTHLAAF 312

Query: 284 RQGLLDAMREFCEFRNLLPRG-VKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQS 342
           R  L   +  + E   LL +  V LTGED+ +    ++S+K+ DP+F+ QTK++L S + 
Sbjct: 313 RAALTRTLNSYAEKTGLLKKEKVSLTGEDMREGLTAIVSVKLPDPKFSSQTKDKLVSSEV 372

Query: 343 AAFVSGVVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRA--SKKVVRKKIASGPA-LPG 399
              +  ++ D  + WL E P   + + +  I  A +R  A  ++++ R+K A   A LPG
Sbjct: 373 RQPLESLMADKMAEWLEENPGHGKMIVQKVIDAAAAREAAKRARELTRRKGAMDIASLPG 432

Query: 400 KLTDCTVQDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQ 459
           KL DC  +D  ++ELFLVEGDSAGGSAKQ R+R  QA++PL+GKILN      D++L+S+
Sbjct: 433 KLADCQERDPAKSELFLVEGDSAGGSAKQGRNRHNQAILPLKGKILNVERARFDKMLSSK 492

Query: 460 EVHDISVALGID-PDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGH 518
           EV  +  A+G    D  NL+ LRY K+ I+ DAD DG HI TLL   F R    +++AGH
Sbjct: 493 EVGTLIQAMGTGIRDDFNLDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPQIIEAGH 552

Query: 519 VYVAMPPLYRIDCGKEVFYALDDQEKEGVL 548
           +++A PPLY+   G+   Y  D+   E  L
Sbjct: 553 LFIAQPPLYKASRGRSEVYLKDEAALEQYL 582



 Score = 58.5 bits (140), Expect = 1e-12
 Identities = 28/70 (40%), Positives = 47/70 (67%), Gaps = 1/70 (1%)

Query: 551 LSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRA 610
           LS  +  +++QR+KGLGEMN  QL ETT+DP+ R ++++ ++ A+  DE+   L+G    
Sbjct: 761 LSAGRKGLSIQRYKGLGEMNAEQLWETTLDPDNRSMLRVEVEQADVADEIFTKLMGDV-V 819

Query: 611 DDRRAWLQRN 620
           + RR ++Q N
Sbjct: 820 EPRREFIQDN 829