Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 659 a.a., DNA topoisomerase IV subunit B (EC 5.99.1.3) from Sphingobium sp. HT1-2

 Score =  453 bits (1166), Expect = e-132
 Identities = 271/637 (42%), Positives = 380/637 (59%), Gaps = 26/637 (4%)

Query: 5   YNAGAIEVLNGLEPVRRRPGMYT---DTTRPNHLGQEVIDNSVDEALAGYASKIQVILHA 61
           Y+A  IEVL GLEPVRRRPGMY    D    +HL  EV+DNS+DEA+AG+A++I++ L  
Sbjct: 17  YDASTIEVLEGLEPVRRRPGMYIGGIDERAFHHLASEVLDNSMDEAVAGHATRIEISLEP 76

Query: 62  DQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVN 120
              L + D+GRG+PVD HP+    S +E+IL  LH+GGKF  K Y  SGGLHGVGISVVN
Sbjct: 77  GNKLTITDNGRGIPVDDHPKFPGKSALEVILTTLHSGGKFEGKAYATSGGLHGVGISVVN 136

Query: 121 ALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFS 180
           ALS +  + V R+ +++  +F  G   + L   G    R  GT+V F PD++ F    F 
Sbjct: 137 ALSIKTVIEVARNKELFRQSFSQGLPTSGLEKVGAAPNRR-GTAVSFIPDSEIFGEQKFK 195

Query: 181 VSRLINNLRAKAVLCPGLEIIFT---DKVNNN---EHRWLYEDGLKDYLAEGVKGYTLLP 234
            ++L    R+KA L  G+EI +    + + ++   E  + +  GL D+L E +       
Sbjct: 196 PAKLYRLARSKAYLFAGVEIRWKCAPELIGDDTPPEAVFQFPGGLADHLKEQLGDRECAT 255

Query: 235 EEPFTG--EFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMR 292
            + F+G  +F  +     WAV W P   +     Y N IPT  GGTH NGLR  L+  +R
Sbjct: 256 TQFFSGNQDFPGEAGRVEWAVAW-PLWSDGSYSWYCNTIPTPDGGTHENGLRAALVKGIR 314

Query: 293 EFCEFRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKD 352
            F E      +   +T +D+      +LS+ ++DPQF  QTK+RL+S  +A  V   V+D
Sbjct: 315 AFGELVGQ-KKAKDITADDIMTSSEIMLSVFIRDPQFQSQTKDRLTSPDAARLVENAVRD 373

Query: 353 AFSLWLNEKPQLAEQLAEVCIANAHSRM-RASKKVVRKKIASGPA---LPGKLTDCTVQD 408
            F  +L +     + L    I     R+ R  +K V++K A+      LPGKLTDC+  D
Sbjct: 374 HFDHFLTDHMDRGKALLAYVIDRMDERLKRKQEKEVKRKTATSARKLRLPGKLTDCSNDD 433

Query: 409 LNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVAL 468
               E+FLVEGDSAGGSAKQARDR+ QA++PLRGKILN    +  ++LA+QE+ D+ +AL
Sbjct: 434 PEGAEIFLVEGDSAGGSAKQARDRKTQAILPLRGKILNVASANTAKILANQEIADMILAL 493

Query: 469 GIDPDSD-NLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLY 527
           G     D N + LRY ++ I+ DAD DG HIATLL   F +    LV+ GH+Y+A PPLY
Sbjct: 494 GCGTRKDCNPDNLRYERIVIMTDADVDGAHIATLLMTFFFQEMPELVRRGHLYLAQPPLY 553

Query: 528 RIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLV 587
           R+  G +  YA+DD ++E +L +   K  KV + RFKGLGEMNP+QLRETTMDP TR L+
Sbjct: 554 RLTAGGKSLYAMDDAQREAMLAK-EFKGKKVEISRFKGLGEMNPMQLRETTMDPKTRSLI 612

Query: 588 QLT----IDDAEATDEMMDMLLGKKRADDRRAWLQRN 620
           ++T    I+D +   ++++ L+G   A  R A++Q N
Sbjct: 613 RITLPDDIEDRQQVRDLVERLMGTNPA-HRFAFIQEN 648