Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 806 a.a., DNA gyrase subunit B from Pseudomonas putida KT2440

 Score =  379 bits (972), Expect = e-109
 Identities = 222/571 (38%), Positives = 334/571 (58%), Gaps = 18/571 (3%)

Query: 3   EQYNAGAIEVLNGLEPVRRRPGMYTDTTRP----NHLGQEVIDNSVDEALAGYASKIQVI 58
           + Y++ +I+VL GL+ VR+RPGMY   T      +H+  EV+DNS+DEALAG+   I VI
Sbjct: 5   QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDITVI 64

Query: 59  LHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISV 118
           +H D+S+ V D+GRG+PVD+H EE VS  E+I+  LHAGGKF + +Y+ SGGLHGVG+SV
Sbjct: 65  IHPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 124

Query: 119 VNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPN 178
           VNALS+++ + VRR G+++E  + HG     + V G      TGT +HF P  + F + +
Sbjct: 125 VNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVG--DSETTGTHIHFKPSAETFKNIH 182

Query: 179 FSVSRLINNLRAKAVLCPGLEIIFTDKVNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPF 238
           FS   L   +R  + L  G+ I+  D+ +  E  + YE GL+ ++       T +  + F
Sbjct: 183 FSWDILAKRIRELSFLNSGVGILLKDERSGKEEFFKYEGGLRAFVEYLNTNKTPVNSQVF 242

Query: 239 TGEFTAQTE---AATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFC 295
              F  Q +       A+ W     E +   + N IP   GGTH+ G R  L  ++  + 
Sbjct: 243 --HFNVQRDDGVGVEVALQWNDSFNENLL-CFTNNIPQRDGGTHLVGFRSSLTRSLNSYI 299

Query: 296 EFRNLLPRG-VKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAF 354
           E   L  +  V  TG+D  +    ++S+K+ DP+F+ QTK++L S +    V   +   F
Sbjct: 300 EQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYF 359

Query: 355 SLWLNEKPQLAEQLAEVCI--ANAHSRMRASKKVVRKKIASGPA-LPGKLTDCTVQDLNR 411
           + +L E P  A+ +    I  A A    R ++++ R+K A   A LPGKL DC  +D   
Sbjct: 360 ADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPAL 419

Query: 412 TELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVAL--G 469
           +EL+LVEGDSAGGSAKQ R+R  QA++PL+GKILN  +   D++++SQEV  +  AL  G
Sbjct: 420 SELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCG 479

Query: 470 IDPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRI 529
           I  +  N++ LRY  + I+ DAD DG HI TLL   F R    LV+ G++Y+A PPLY++
Sbjct: 480 IGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQPPLYKV 539

Query: 530 DCGKEVFYALDDQEKEGVLERLSQKKAKVNV 560
             GK+  Y  DD+  E  + + + + A +++
Sbjct: 540 KRGKQEQYIKDDEAMEEYMTQSALEDASLHL 570



 Score = 68.9 bits (167), Expect = 8e-16
 Identities = 34/77 (44%), Positives = 54/77 (70%), Gaps = 1/77 (1%)

Query: 544 KEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDM 603
           KEG+   +++   +  +QR+KGLGEMNP QL ETTMDP  RR++++TI+DA A D++ + 
Sbjct: 722 KEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIAADQIFNT 781

Query: 604 LLGKKRADDRRAWLQRN 620
           L+G    + RR +++ N
Sbjct: 782 LMG-DAVEPRRDFIESN 797