Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 666 a.a., DNA topoisomerase IV subunit B from Magnetospirillum magneticum AMB-1

 Score =  420 bits (1079), Expect = e-121
 Identities = 269/649 (41%), Positives = 369/649 (56%), Gaps = 32/649 (4%)

Query: 4   QYNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYASKIQVILH 60
           +Y+A  IEVL GLEPVRRRPGMY   TD    +HL  EV+DN++DEA+AG+A  I++ L 
Sbjct: 17  EYSAKDIEVLEGLEPVRRRPGMYIGGTDDRALHHLVAEVLDNAMDEAVAGHAGWIELELA 76

Query: 61  ADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVV 119
            D +  V D+GRG+PVD HP+    S +E+IL  LH+GGKF    Y+ SGGLHGVG+SVV
Sbjct: 77  VDGTCTVRDNGRGIPVDPHPKYPDKSALEVILTTLHSGGKFGGDAYKVSGGLHGVGVSVV 136

Query: 120 NALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYF-DSPN 178
           NALS  + V V RD  ++   F  G  +  L   G    R  GT+V F PD + F +   
Sbjct: 137 NALSDALTVEVARDRVLWSQRFSRGLPLGPLEKVGPVQNRR-GTTVIFHPDAQIFGERAQ 195

Query: 179 FSVSRLINNLRAKAVLCPGLEIIFT---------DKVNNNEHRWLYEDGLKDYLAEGVKG 229
                L    R+KA L  G++I +          D++   E    +  GL D+L   +K 
Sbjct: 196 LRPGPLYRMARSKAYLFRGVQIRWKCDPLLIKDGDEIPA-EDTLHFPGGLTDFLKAVLKE 254

Query: 230 YTLLPEEPFTGEFTAQTEAAT--WAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGL 287
             L+ ++ F G      +     WA+ W  +  E    +Y N +PT +GGTH  G R  L
Sbjct: 255 RPLVTKDMFQGTAPLADDMGQVEWALAWPDDDEEGFVNTYCNTVPTPEGGTHEAGFRNLL 314

Query: 288 LDAMREFCEFRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVS 347
              +R + E       G ++T EDV      ++S+ ++DPQF GQTKE+L+S ++   V 
Sbjct: 315 TKGLRSYGEMAGNKKAG-QITAEDVMVGACVMVSLFIRDPQFQGQTKEKLASPEATRLVE 373

Query: 348 GVVKDAFSLWLNEKPQLAEQLAEVCIANAH--SRMRASKKVVRKKIASGPALPGKLTDCT 405
             VKD F  WL+     A  L    I  A   +R R +K++ RK       LPGKL DC+
Sbjct: 374 NAVKDHFDHWLSGDKASAGALLTRLIEKAEDRARRRQAKEMNRKTPTKRLRLPGKLADCS 433

Query: 406 VQDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDIS 465
                 TELFLVEGDSAGGSAK  R+RE QA++PLRGKILN    S D++  +QE+ D+ 
Sbjct: 434 RSVNVGTELFLVEGDSAGGSAKSGRNRETQAILPLRGKILNVASASTDKLRQNQELKDLM 493

Query: 466 VALGIDP-DSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMP 524
            ALG    D+ + E LRY K+ I+ DAD DG HIA+LL   F +    L++ GH+Y+A+P
Sbjct: 494 EALGCGARDNYDDEKLRYEKIIIMTDADVDGAHIASLLMTFFYQEMPELIRNGHLYLALP 553

Query: 525 PLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTR 584
           PLYR+  G+ V Y  DD  KE +L+ L   K  V + RFKGLGEM P QL+ETTMDP+ R
Sbjct: 554 PLYRLAHGQIVAYGRDDAHKEELLKTLFANKKNVEISRFKGLGEMPPAQLKETTMDPSRR 613

Query: 585 RLVQLTI-------DDAEATD--EMMDMLLGKKRADDRRAWLQRNGDMA 624
            L+++TI       D  EA D   +++ L+G+K  + R A++Q     A
Sbjct: 614 TLLRVTIPSGRTEEDHEEAKDVARLVESLMGRK-PELRFAFIQERARFA 661