Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 816 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Magnetospirillum magneticum AMB-1

 Score =  353 bits (906), Expect = e-101
 Identities = 217/564 (38%), Positives = 303/564 (53%), Gaps = 27/564 (4%)

Query: 3   EQYNAGAIEVLNGLEPVRRRPGMYTDTTRP----NHLGQEVIDNSVDEALAGYASKIQVI 58
           E+Y AG+I+VL GLE VR+RPGMY   T      + +  E +DN+VDE + G+  +  V+
Sbjct: 19  EEYGAGSIQVLRGLEAVRKRPGMYIGDTDDGSGLHRMIYEAVDNAVDEIMNGFGDRCDVV 78

Query: 59  LHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISV 118
           L+AD S+ V D+GRG+PVDIHPEE +S  E+ L KLHAGGKF   + + S GLHGVGISV
Sbjct: 79  LNADGSVLVTDNGRGIPVDIHPEEGISAAEVALTKLHAGGKFEQNSNRISSGLHGVGISV 138

Query: 119 VNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPN 178
           VNALS+ +E+ + R G+ + + F HG+    L V G CG R TGT V F P    F   +
Sbjct: 139 VNALSEWLELRIWRHGKEHFMRFRHGEPEAPLAVVGECGDR-TGTQVVFLPSKGTFSHTD 197

Query: 179 FSVSRLINNLRAKAVLCPGLEIIFTDK--VNNNEHRWLYEDGLK------DYLAEGVKGY 230
           F    + + LR  A L     ++  D+      E    YE G++      D   E +   
Sbjct: 198 FDFDTVEHRLRELAFLNSRATLLIKDERHAETREALLHYEGGVQAFVQWLDRSKEALHAP 257

Query: 231 TLLPEEPFTGEFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDA 290
            L+  E          E       W     E     + N +P   GGTH+ G R  L   
Sbjct: 258 ILIAAEKDVVRLELSME-------WTDSYHETCL-CFTNNVPQKDGGTHLAGFRAALTRT 309

Query: 291 MREFCEFRNLLPR-GVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGV 349
           +  +     +  +  V L G+D+ +    VLS+KM DP+F+ Q KE+L S +    V  +
Sbjct: 310 INAYANDSGIAKKEKVNLAGDDMREGLTCVLSVKMPDPKFSSQAKEKLVSSEVRPLVENL 369

Query: 350 VKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRASKK---VVRKKIASGPALPGKLTDCTV 406
           V +  + W  E P  A ++    +  A +R  A K      RK +     LPGKL DC  
Sbjct: 370 VGEKLAEWFEEHPAEARKVVTKVVEAAAAREAARKARELTRRKGVLDIATLPGKLADCQE 429

Query: 407 QDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISV 466
           +D   +ELF+VEGDSAGGSAKQ R+R  QA++PL+GKILN      D++L+S E+  +  
Sbjct: 430 RDPALSELFIVEGDSAGGSAKQGRNRANQAILPLKGKILNVERARFDKMLSSAEIGTLIA 489

Query: 467 AL--GIDPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMP 524
           A+  GI  +  N++  RY K+ I+ DAD DG HI TLL   F R   AL++ G++Y+A P
Sbjct: 490 AMGTGIGREDFNVDKARYHKIIIMTDADVDGSHIRTLLLTFFYRQMPALIERGYLYIAQP 549

Query: 525 PLYRIDCGKEVFYALDDQEKEGVL 548
           PLYR   G+   Y  DD+  E  L
Sbjct: 550 PLYRAKRGQSEVYLKDDRALEEYL 573



 Score = 58.5 bits (140), Expect = 1e-12
 Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 551 LSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRA 610
           + Q +  + +QR+KGLGEMNP QL ETT+DP  R L+Q+ +  A+  +++   L+G    
Sbjct: 739 MEQGRRGIAIQRYKGLGEMNPEQLWETTLDPQARSLLQVKVAQADDAEQVFSTLMGDV-V 797

Query: 611 DDRRAWLQRN 620
           + RR ++Q N
Sbjct: 798 EPRRDFIQTN 807