Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 803 a.a., DNA gyrase, B subunit from Enterobacter asburiae PDN3

 Score =  381 bits (979), Expect = e-110
 Identities = 243/628 (38%), Positives = 352/628 (56%), Gaps = 34/628 (5%)

Query: 1   MTEQYNAGAIEVLNGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGYASKIQ 56
           M+  Y++ +I+VL GL+ VR+RPGMY     D T  +H+  EV+DN++DEALAG+   I 
Sbjct: 1   MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIV 60

Query: 57  VILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGI 116
           V +HAD S+ V DDGRG+P  IHPEE VS  E+I+  LHAGGKF + +Y+ SGGLHGVG+
Sbjct: 61  VTIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 117 SVVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDS 176
           SVVNALS+++E+ ++R+G+++   + HG     L VTG   +  TGT V FWP  + F +
Sbjct: 121 SVVNALSQKLELVIQREGKIHRQLYTHGVPQAPLAVTGDTDK--TGTMVRFWPSHETFTN 178

Query: 177 -PNFSVSRLINNLRAKAVLCPGLEIIFTDKVNNNEHRWLYEDGLKDYLAEGVKGYTLLPE 235
              F    L   LR  + L  G+ I   DK +  E  + YE G+K ++    K  T  P 
Sbjct: 179 VTEFEYDILAKRLRELSFLNSGVSIRLKDKRDGKEDHFHYEGGIKAFVEYLNKNKT--PI 236

Query: 236 EPFTGEFTAQTE--AATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMRE 293
            P    F+ + +      A+ W  +G +     + N IP   GGTH+ G R  +   +  
Sbjct: 237 HPNIFYFSTEKDGIGVEVALQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNA 295

Query: 294 FCEFRNLLPRG-VKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKD 352
           + +      +  V  TG+D  +    V+S+K+ DP+F+ QTK++L S +  + V   + +
Sbjct: 296 YMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNE 355

Query: 353 AFSLWLNEKPQLAEQLAEVCI--ANAHSRMRASKKVVRKKIASGPA-LPGKLTDCTVQDL 409
             S +L E P  A+ +    I  A A    R ++++ R+K A   A LPGKL DC  +D 
Sbjct: 356 LLSEYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDP 415

Query: 410 NRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVAL- 468
             +EL+LVEGDSAGGSAKQ R+R+ QA++PL+GKILN  +   D++L+SQEV  +  AL 
Sbjct: 416 ALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 475

Query: 469 -GIDPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLY 527
            GI  D  N + LRY  + I+ DAD DG HI TLL   F R    +V+ GHVY+A PPLY
Sbjct: 476 CGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLY 535

Query: 528 RIDCGKEVFYALDDQEKE----------GVLERLSQKKAKVNVQRFKGLGEMNPLQLRET 577
           ++  GK+  Y  DD+  +            L   S   A       + + E N  Q   T
Sbjct: 536 KVKKGKQEQYIKDDEAMDQYQIAIALDGATLHANSHAPALAGEPLERLVSEFNATQKMIT 595

Query: 578 TMD---PNT--RRLV-QLTIDDAEATDE 599
            M+   P T  + LV Q T+ +A+ +DE
Sbjct: 596 RMERRYPKTLLKELVYQPTLTEADLSDE 623



 Score = 67.0 bits (162), Expect = 3e-15
 Identities = 31/70 (44%), Positives = 50/70 (71%), Gaps = 1/70 (1%)

Query: 551 LSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRA 610
           + + +  + +QR+KGLGEMNP QL ETTMDP +RR++++T+ DA A D++   L+G    
Sbjct: 726 VKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMG-DAV 784

Query: 611 DDRRAWLQRN 620
           + RRA+++ N
Sbjct: 785 EPRRAFIEEN 794