Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., DNA topoisomerase 4 subunit B from Escherichia coli ECRC62

 Score = 1040 bits (2689), Expect = 0.0
 Identities = 507/628 (80%), Positives = 560/628 (89%), Gaps = 2/628 (0%)

Query: 1   MTEQYNAGAIEVLNGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGYASKIQVILH 60
           MT+ YNA AIEVL GLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAG+A ++ VILH
Sbjct: 1   MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILH 60

Query: 61  ADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVN 120
           ADQSLEVIDDGRGMPVDIHPEE V  VELILC+LHAGGKFSNKNYQFSGGLHGVGISVVN
Sbjct: 61  ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN 120

Query: 121 ALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFS 180
           ALSKRVEV VRRDGQVY IAFE+G+KV +L V GTCG+RNTGTSVHFWPD  +FDSP FS
Sbjct: 121 ALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS 180

Query: 181 VSRLINNLRAKAVLCPGLEIIFTDKVNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPFTG 240
           VSRL + L+AKAVLCPG+EI F D++NN E RW Y+DGL DYLAE V G   LPE+PF G
Sbjct: 181 VSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIG 240

Query: 241 EFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNL 300
            F   TEA  WA++WLPEGGEL+TESYVNLIPT QGGTHVNGLRQGLLDAMREFCE+RN+
Sbjct: 241 NFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNI 300

Query: 301 LPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLNE 360
           LPRGVKL+ ED++DRCAYVLS+KMQDPQFAGQTKERLSSRQ AAFVSGVVKDAF LWLN+
Sbjct: 301 LPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQ 360

Query: 361 KPQLAEQLAEVCIANAHSRMRASKKVVRKKIASGPALPGKLTDCTVQDLNRTELFLVEGD 420
             Q AE LAE+ I++A  RMRA+KKVVRKK+ SGPALPGKL DCT QDLNRTELFLVEGD
Sbjct: 361 NVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGD 420

Query: 421 SAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALGIDPDSDNLEAL 480
           SAGGSAKQARDRE+QA+MPL+GKILNTWEVS+D+VLASQEVHDISVA+GIDPDSD+L  L
Sbjct: 421 SAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQL 480

Query: 481 RYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEVFYALD 540
           RYGK+CILADADSDGLHIATLLCALF +HFRALVK GHVYVA+PPLYRID GKEV+YAL 
Sbjct: 481 RYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALT 540

Query: 541 DQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDA--EATD 598
           ++EKEGVLE+L +KK K NVQRFKGLGEMNP+QLRETT+DPNTRRLVQLTIDD   + TD
Sbjct: 541 EEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTD 600

Query: 599 EMMDMLLGKKRADDRRAWLQRNGDMAEV 626
            MMDMLL KKR++DRR WLQ  GDMAE+
Sbjct: 601 AMMDMLLAKKRSEDRRNWLQEKGDMAEI 628