Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 803 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Dickeya dianthicola ME23

 Score =  372 bits (956), Expect = e-107
 Identities = 224/556 (40%), Positives = 325/556 (58%), Gaps = 19/556 (3%)

Query: 1   MTEQYNAGAIEVLNGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGYASKIQ 56
           M+  Y++ +I+VL GL+ VR+RPGMY     D T  +H+  EV+DN++DEALAGY   I 
Sbjct: 1   MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIV 60

Query: 57  VILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGI 116
           V +HAD S+ V DDGRG+P  IH EE VS  E+I+  LHAGGKF + +Y+ SGGLHGVG+
Sbjct: 61  VTIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120

Query: 117 SVVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYF-D 175
           SVVNALS+++E+ +RR+G+V+   + HG     L  TG      TGT+V FWP  + F +
Sbjct: 121 SVVNALSEKLELVIRREGKVHRQEYRHGVPQAPLGATGDADA--TGTTVRFWPSLETFTN 178

Query: 176 SPNFSVSRLINNLRAKAVLCPGLEIIFTD-KVNNNEHRWLYEDGLKDYLAEGVKGYTLLP 234
              F    L   LR  + L  G+ I   D +  N    + YE G+K ++    +  T  P
Sbjct: 179 MVEFEYDILAKRLRELSFLNSGVSIRLRDEREENKADHFHYEGGIKAFVEYLNRNKT--P 236

Query: 235 EEPFTGEFTAQTEA--ATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMR 292
             P    F+A+ ++     A+ W  +G +     + N IP   GGTH+ G R  +   + 
Sbjct: 237 IHPQVFYFSAEKDSIGVEIAMQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLN 295

Query: 293 EFCEFRNLLPRG-VKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVK 351
            + +      +  V  TG+D  +    V+S+K+ DP+F+ QTK++L S +  + +  ++ 
Sbjct: 296 NYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSALESLMN 355

Query: 352 DAFSLWLNEKPQLAEQLAEVCI--ANAHSRMRASKKVVRKKIASGPA-LPGKLTDCTVQD 408
           D    +L E P  A+ +    I  A A    R ++++ R+K A   A LPGKL DC  +D
Sbjct: 356 DRLVDYLMENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERD 415

Query: 409 LNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVAL 468
              +EL+LVEGDSAGGSAKQ R+R+ QA++PL+GKILN  +   D++L+SQEV  +  AL
Sbjct: 416 PALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 475

Query: 469 --GIDPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPL 526
             GI  D  N + LRY  + I+ DAD DG HI TLL   F R    +V+ GHV++A PPL
Sbjct: 476 GCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVFIAQPPL 535

Query: 527 YRIDCGKEVFYALDDQ 542
           Y++  GK+  Y  DD+
Sbjct: 536 YKVKKGKQEQYIKDDE 551



 Score = 68.6 bits (166), Expect = 1e-15
 Identities = 32/70 (45%), Positives = 50/70 (71%), Gaps = 1/70 (1%)

Query: 551 LSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRA 610
           + + +  + +QR+KGLGEMNP QL ETTMDP +RR++++T+ DA A DE+   L+G    
Sbjct: 726 VKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADELFTTLMG-DAV 784

Query: 611 DDRRAWLQRN 620
           + RRA+++ N
Sbjct: 785 EPRRAFIEEN 794