Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  238 bits (608), Expect = 5e-67
 Identities = 186/598 (31%), Positives = 284/598 (47%), Gaps = 71/598 (11%)

Query: 4   QYNAGAIEVLNGLEPVRRRPGMYTDTTRPNH--------LGQEVIDNSVDEALAGYASKI 55
           QY   +I  L+  E +R RPGMY                L +E++DNS+DE + G+   I
Sbjct: 7   QYTEDSIRSLDWKEHIRLRPGMYIGKLGDGSAQDDGIYVLVKEILDNSIDEHMMGHGRTI 66

Query: 56  QVILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVG 115
            + + ++  +E+ D GRG+P+          V   + K++ GGK+ +  +Q S GL+GVG
Sbjct: 67  DIKI-SEHKVEIRDYGRGIPL--------GKVVDCVSKINTGGKYDSGAFQKSVGLNGVG 117

Query: 116 ISVVNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFD 175
              VNALS+  +V   RDG+     FE G+ + +  V  +  R   GT + F PD   F 
Sbjct: 118 TKAVNALSQYFKVQSYRDGETKIAEFEKGELIEDRPVEKSSDRN--GTKIVFSPDATVFK 175

Query: 176 SPNFSVSRLINNLRAKAVLCPGLEIIFTDKVNNNEHRWLYEDGLKDYLAEGV----KGYT 231
           + +F    L N +   A L  GL I F  K      ++  + GL D L   V    K Y 
Sbjct: 176 NYHFIPEYLENQIWNYAFLNSGLTINFNGK------KYFSDKGLHDLLDRKVDDDSKRYP 229

Query: 232 LLPEEPFTGEFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAM 291
           ++  +    E          A+    + GE    S+VN   T QGGTH+   R+ ++ A+
Sbjct: 230 IIHLKGNDIEM---------ALTHTNQYGEEY-HSFVNGQYTTQGGTHLAAFREAIVKAV 279

Query: 292 REFCEFRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSA-------A 344
           REF +              D+    A  +++++Q+P F  QTK +L S            
Sbjct: 280 REFFK--------KDYDAADIRQSIAAAIAVRVQEPVFESQTKTKLGSHSVGPDGPTLRT 331

Query: 345 FVSGVVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRAS--KKVVRKKIASGPALPGKLT 402
           FV+  VK     +L++  + A  L +  + +   R   S  KK+  ++         KL 
Sbjct: 332 FVNDFVKTELDNYLHKNQETANALLKRILQSERERKEISGIKKLANERAKKANLHNRKLR 391

Query: 403 DCTV---------QDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSAD 453
           DC V         +  N T LF+ EGDSA GS  ++RD + QAV  LRGK LN + ++  
Sbjct: 392 DCRVHYDDVKANEEKKNDTMLFITEGDSASGSITKSRDVQTQAVFSLRGKPLNCFGMTKK 451

Query: 454 QVLASQEVHDISVALGIDPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRAL 513
            V  ++E + +  AL I+   D ++ LRY K+ I  DAD DG+HI  L+   F + F  L
Sbjct: 452 VVYENEEFNLLQHALNIE---DGVDGLRYRKIVIATDADVDGMHIRLLIMTYFLQFFPEL 508

Query: 514 VKAGHVYVAMPPLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNP 571
           VK GH+Y+   PL+R+   KE  Y   + EK   + +L  K     + RFKGLGE++P
Sbjct: 509 VKNGHLYILDTPLFRVRNKKETIYCYSEDEKRKAIAKLGNKP---EITRFKGLGEISP 563