Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 652 a.a., DNA gyrase, B subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  429 bits (1103), Expect = e-124
 Identities = 249/644 (38%), Positives = 370/644 (57%), Gaps = 25/644 (3%)

Query: 4   QYNAGAIEVLNGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGYASKIQVILH 60
           +Y+AG I++L GLE VR+RP MY         +HL  EV+DNS+DEALAG+   I V + 
Sbjct: 11  EYSAGNIQILEGLEAVRKRPAMYIGDVGVKGLHHLIWEVVDNSIDEALAGHCDTIHVTVL 70

Query: 61  ADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVN 120
            D S++V D+GRG+P D+H +EK S +E+++  LHAGGKF    Y+ SGGLHGVG+S VN
Sbjct: 71  EDNSVQVEDNGRGIPTDMHEKEKRSALEVVMTVLHAGGKFDKDTYKVSGGLHGVGVSCVN 130

Query: 121 ALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFS 180
           ALS  ++  V R+G+V+E  +  G   T +T  G   +R  GT +HF PD   F    + 
Sbjct: 131 ALSTHLKATVYRNGKVFEQEYSRGVPQTGVTEIGETEKR--GTIIHFVPDGDIFTVTEYK 188

Query: 181 VSRLINNLRAKAVLCPGLEIIFTD------KVNNNEHRWLYEDGLKDYLAEGVKGYTLLP 234
              + N LR  A L  G+ I F D      + N     +  E GL +++    +    + 
Sbjct: 189 YETIANRLREMAFLNAGVRIFFKDMRELDEEGNPKSDEFFSEGGLIEFVEYLDETREKII 248

Query: 235 EEPFTGEFTAQTEAATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREF 294
           +EP   E          A+ +     E +  SYVN I T +GGTHV+G R+ L   ++ +
Sbjct: 249 QEPIYIESEKNAVPVQVAMSYNSSFSENVV-SYVNTINTYEGGTHVSGFRRALTRTLKGY 307

Query: 295 CEFRNLLPR-GVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDA 353
            +   +L +    ++G+D  +    V+S+K+ +PQF GQTK +L + +  + V   V + 
Sbjct: 308 ADKSGMLDKVKFDVSGDDFREGLTAVISVKVAEPQFEGQTKTKLGNSEVVSAVDSAVSEV 367

Query: 354 FSLWLNEKPQLAEQLAEVCIANA---HSRMRASKKVVRKKIASGPALPGKLTDCTVQDLN 410
              WL E P+ A+ +    +  A   H+  +A + V RK +  G  LPGKL DC   +  
Sbjct: 368 LQYWLEEHPKEAKIIVGKVVLAAQARHAARKAREMVQRKNVLGGGGLPGKLADCANTNPE 427

Query: 411 RTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALGI 470
             EL+LVEGDSAGGSAKQ RDR+FQA++PL+GKILN  +    ++  + E+ +I  ALG+
Sbjct: 428 VCELYLVEGDSAGGSAKQGRDRDFQAILPLKGKILNVEKAHEHKIYDNDEIKNILTALGV 487

Query: 471 ------DPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMP 524
                 D    +L  LRY K+ I+ DAD DG HI TL+  LF R+ R+L++ G+VY+A+P
Sbjct: 488 KFGTAEDEKELDLTNLRYHKIVIMTDADIDGSHIRTLILTLFFRYMRSLIENGYVYIALP 547

Query: 525 PLYRIDCGKEVFYALDDQEKEGVLERLS--QKKAKVNVQRFKGLGEMNPLQLRETTMDPN 582
           PLY +  GK+  Y   + E+  + + ++   K   V +QR+KGLGEMNP QL  TTMDP 
Sbjct: 548 PLYLLKKGKDERYCWSEDERIKLTKEMAGDGKTDNVGIQRYKGLGEMNPEQLWTTTMDPE 607

Query: 583 TRRLVQLTIDDAEATDEMMDMLLGKKRADDRRAWLQRNGDMAEV 626
           +R L Q+TI+ A   D +  ML+G + A  RR ++++N   A++
Sbjct: 608 SRTLKQVTIESAAEADHLFSMLMGDEVA-PRREFIEKNAKYAKI 650