Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 806 a.a., DNA gyrase subunit B from Alteromonas macleodii MIT1002

 Score =  379 bits (973), Expect = e-109
 Identities = 221/550 (40%), Positives = 328/550 (59%), Gaps = 18/550 (3%)

Query: 5   YNAGAIEVLNGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGYASKIQVILH 60
           Y++ +I+VL GL+ VR+RPGMY     D T  +H+  EV+DNS+DEALAG+ S+I V++H
Sbjct: 7   YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSEITVLIH 66

Query: 61  ADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVN 120
           +D S+ V DDGRG+P ++HPEE VS  E+I+  LHAGGKF + +Y+ SGGLHGVG+SVVN
Sbjct: 67  SDGSVSVSDDGRGIPTEMHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 126

Query: 121 ALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFS 180
           ALS R+++ +RR G+ +E  + HG     L VTG   +  TGT + FWP +  F    + 
Sbjct: 127 ALSSRLKLRIRRGGKAHEQEYHHGVPQAPLAVTGDTDK--TGTMIRFWPSSDTFTDTLYH 184

Query: 181 VSRLINNLRAKAVLCPGLEIIFTDKVNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPFTG 240
              L   LR  + L  G+ I   D+ +  E  ++YE G+K ++    +  T + ++ F  
Sbjct: 185 YDILAKRLRELSFLNSGVSIRLKDERDGKEDHFMYEGGIKAFVEYLNEKKTPVHQKVF-- 242

Query: 241 EFTAQTE---AATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEF 297
            F+++ E   A   A+ W     E +   + N IP   GGTH+ G R  L   +  + E 
Sbjct: 243 HFSSEQEDGIAVEVAMQWNDSFQENVF-CFTNNIPQRDGGTHLAGFRGALTRTLNNYMEK 301

Query: 298 RNLLPRG-VKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSL 356
             L  +     +G+D  +    V+S+K+ DP+F+ QTK++L S +    V   + +  + 
Sbjct: 302 EGLNKKAKTNASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVRPAVESAMNEKLAE 361

Query: 357 WLNEKPQLAEQLAEVCI--ANAHSRMRASKKVVRKKIASGPA-LPGKLTDCTVQDLNRTE 413
           +L E P  ++ +A   I  A A    R ++++ R+K A   A LPGKL DC  +D   +E
Sbjct: 362 FLLENPAESKIIAGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSE 421

Query: 414 LFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVAL--GID 471
           L++VEGDSAGGSAKQ R+R+ QA++PL+GKILN  +   D++L+SQEV  +  AL  GI 
Sbjct: 422 LYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG 481

Query: 472 PDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDC 531
            D  + E LRY  + I+ DAD DG HI TLL   F R    +++ G+VY+A PPLY++  
Sbjct: 482 RDEYDPEKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVYIAQPPLYKVKK 541

Query: 532 GKEVFYALDD 541
           GK+  Y  DD
Sbjct: 542 GKQEQYLKDD 551



 Score = 68.6 bits (166), Expect = 1e-15
 Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 1/77 (1%)

Query: 544 KEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDM 603
           KE +   +++ K    +QR+KGLGEMNP QL ETTMDP +RR++Q+TI+DA   D++   
Sbjct: 722 KEALEWLMNEAKRGQYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAIGCDQLFTT 781

Query: 604 LLGKKRADDRRAWLQRN 620
           L+G  + + RR +++ N
Sbjct: 782 LMG-DQVEPRREFIEAN 797