Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 811 a.a., DNA gyrase subunit B from Agrobacterium fabrum C58

 Score =  394 bits (1011), Expect = e-113
 Identities = 238/591 (40%), Positives = 346/591 (58%), Gaps = 21/591 (3%)

Query: 4   QYNAGAIEVLNGLEPVRRRPGMYTDTTRP----NHLGQEVIDNSVDEALAGYASKIQVIL 59
           +Y A +I+VL GL+ VR+RPGMY   T      +H+  EV+DN++DEALAG+A  + V L
Sbjct: 14  EYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHADLVTVTL 73

Query: 60  HADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVV 119
           +AD S+ V D+GRG+P DIH  E VS  E+I+ +LHAGGKF   +Y+ SGGLHGVG+SVV
Sbjct: 74  NADGSVTVTDNGRGIPTDIHSSEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVV 133

Query: 120 NALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNF 179
           NALS  +++ +RR+G+++EI F HG     L+V G    R +GT V F    + F   ++
Sbjct: 134 NALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGR-SGTEVTFLASPQTFTMTDY 192

Query: 180 SVSRLINNLRAKAVLCPGLEIIFTDKVNNN--EHRWLYEDGLKDYLAEGVKGYTLLPEEP 237
               L + LR  A L  G+ I+ TDK +++  +   LY+ GL+ ++    +    L ++P
Sbjct: 193 DYGTLEHRLRELAFLNSGVRILLTDKRHSDVKQQELLYDGGLEAFVRYLDRAKKPLVDKP 252

Query: 238 FTGEFTAQTEAATWAV-IWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCE 296
                 ++ +  T  V +W  +        + N IP   GGTH+ G R  L   +  + +
Sbjct: 253 IA--IHSEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAALTRQVTSYAD 310

Query: 297 FRNLLPR-GVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFS 355
              ++ R  V L GED  +    +LS+K+ DP+F+ QTK++L S +    V  +V +A S
Sbjct: 311 TSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEALS 370

Query: 356 LWLNEKPQLAEQLAEVCI--ANAHSRMRASKKVVRKKIASGPA-LPGKLTDCTVQDLNRT 412
            WL E P  A+ L    +  A A    R ++++ R+K A   A LPGKL DC+ +D  ++
Sbjct: 371 TWLEEHPSEAKILIGKVVEAAVAREAARKARELTRRKGALDIASLPGKLADCSERDPAKS 430

Query: 413 ELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVALG--I 470
           ELFLVEGDSAGGSAKQ R RE QA++PLRGKILN      D++L+SQE+  +  ALG  I
Sbjct: 431 ELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTSI 490

Query: 471 DPDSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRID 530
             D  N + LRY K+ I+ DAD DG HI TLL   F R    L++ GH+Y+A PPLY++ 
Sbjct: 491 GKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQPPLYKVT 550

Query: 531 CGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMN-PLQLRETTMD 580
            GK V Y  D++  E  L  +  ++A + +    G GE+     LRE  +D
Sbjct: 551 RGKSVQYLKDEKALEEYLISMGIEEASLTL----GTGEVRVGADLREVILD 597



 Score = 58.5 bits (140), Expect = 1e-12
 Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 9/122 (7%)

Query: 501 LLCALFTRHFRALV-KAGHVYVAMPPLYRIDCGKEVFYALDDQEKEGVLERLSQKKAK-V 558
           LL +   RH   LV +   +Y   P L R D   E+           +L+ +     K +
Sbjct: 688 LLGSADARHIDQLVARTRDIYATPPVLQRKDGSMEL------AGPRALLDAIFAAGRKGL 741

Query: 559 NVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDMLLGKKRADDRRAWLQ 618
           ++QR+KGLGEMN  QL ETT+D N R L+Q+ ++DA   D +   L+G +  + RR ++Q
Sbjct: 742 SMQRYKGLGEMNAEQLWETTLDANVRSLLQVRVNDATDADGLFARLMGDE-VEPRRDFIQ 800

Query: 619 RN 620
            N
Sbjct: 801 EN 802